Gene annotation
Transcriptome id Sobic.004G101000.1
Synonym Sb04g008260
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5XYJ9
Pfam PF00010
Panther DB PTHR13935 PTHR13935:SF46
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G20970 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g13670.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS5A02G479200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G345400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
2 Sobic.009G216050 - -
3 Sobic.003G296300 WRKY13, expressed -
4 Sobic.009G038000 expressed protein -
5 Sobic.002G407200 sex determination protein tasselseed-2, putative, expressed -
6 Sobic.010G214200 OsFBK17 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.001G314800 hydrolase, alpha/beta fold family protein, putative, expressed -
8 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
9 Sobic.003G310500 DUF567 domain containing protein, putative, expressed -
10 Sobic.008G038100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G209500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G319100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.009G067400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.006G265000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
15 Sobic.006G014700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
16 Sobic.006G246100 one cut domain family member 3, putative, expressed -
17 Sobic.008G018600 harpin-induced protein 1 domain containing protein, expressed -
18 Sobic.009G192100 DUF567 domain containing protein, putative, expressed -
19 Sobic.006G045000 drought-induced protein 1, putative, expressed -
20 Sobic.004G333300 serine-rich protein, putative, expressed -


Gene co-expression network
sample Sobic004G101000 Sobic004G101000 Sobic001G345400 Sobic001G345400 Sobic004G101000--Sobic001G345400 Sobic009G216050 Sobic009G216050 Sobic004G101000--Sobic009G216050 Sobic003G296300 Sobic003G296300 Sobic004G101000--Sobic003G296300 Sobic009G038000 Sobic009G038000 Sobic004G101000--Sobic009G038000 Sobic002G407200 Sobic002G407200 Sobic004G101000--Sobic002G407200 Sobic010G214200 Sobic010G214200 Sobic004G101000--Sobic010G214200 Sobic001G314800 Sobic001G314800 Sobic004G101000--Sobic001G314800 Sobic001G195100 Sobic001G195100 Sobic004G101000--Sobic001G195100 Sobic003G310500 Sobic003G310500 Sobic004G101000--Sobic003G310500 Sobic001G345400--Sobic003G296300 Sobic001G345400--Sobic004G101000 Sobic001G345400--Sobic009G038000 Sobic005G155600 Sobic005G155600 Sobic001G345400--Sobic005G155600 Sobic006G246100 Sobic006G246100 Sobic001G345400--Sobic006G246100 Sobic004G333300 Sobic004G333300 Sobic001G345400--Sobic004G333300 Sobic001G530350 Sobic001G530350 Sobic001G345400--Sobic001G530350 Sobic009G192100 Sobic009G192100 Sobic001G345400--Sobic009G192100 Sobic008G038100 Sobic008G038100 Sobic001G345400--Sobic008G038100 Sobic004G209500 Sobic004G209500 Sobic009G216050--Sobic004G209500 Sobic006G045000 Sobic006G045000 Sobic009G216050--Sobic006G045000 Sobic009G067400 Sobic009G067400 Sobic009G216050--Sobic009G067400 Sobic009G216050--Sobic004G101000 Sobic004G217700 Sobic004G217700 Sobic009G216050--Sobic004G217700 Sobic004G174000 Sobic004G174000 Sobic009G216050--Sobic004G174000 SobicK044407 SobicK044407 Sobic009G216050--SobicK044407 Sobic009G216050--Sobic002G407200 Sobic008G181801 Sobic008G181801 Sobic009G216050--Sobic008G181801 Sobic003G296300--Sobic001G345400 Sobic003G296300--Sobic006G246100 Sobic003G296300--Sobic004G101000 Sobic006G167800 Sobic006G167800 Sobic003G296300--Sobic006G167800 Sobic001G093900 Sobic001G093900 Sobic003G296300--Sobic001G093900 Sobic010G157500 Sobic010G157500 Sobic003G296300--Sobic010G157500 Sobic003G296300--Sobic009G038000 Sobic001G526000 Sobic001G526000 Sobic003G296300--Sobic001G526000 Sobic003G296300--Sobic001G195100 Sobic009G038000--Sobic004G101000 Sobic009G038000--Sobic001G345400 Sobic009G038000--Sobic003G296300 Sobic004G140000 Sobic004G140000 Sobic009G038000--Sobic004G140000 Sobic006G014700 Sobic006G014700 Sobic009G038000--Sobic006G014700 Sobic009G038000--Sobic002G407200 Sobic009G038000--Sobic008G038100 Sobic009G038000--Sobic001G314800 Sobic002G216500 Sobic002G216500 Sobic009G038000--Sobic002G216500 Sobic008G018600 Sobic008G018600 Sobic002G407200--Sobic008G018600 Sobic001G056500 Sobic001G056500 Sobic002G407200--Sobic001G056500 Sobic002G407200--Sobic009G216050 Sobic002G407200--Sobic004G217700 Sobic002G407200--Sobic004G101000 Sobic002G407200--Sobic001G314800 Sobic002G407200--Sobic003G310500 Sobic002G407200--Sobic009G192100 Sobic002G407200--Sobic008G038100 Sobic010G214200--Sobic006G045000 Sobic010G214200--Sobic004G209500 Sobic010G214200--Sobic004G217700 Sobic010G214200--Sobic001G056500 Sobic010G214200--Sobic002G216500 Sobic004G195800 Sobic004G195800 Sobic010G214200--Sobic004G195800 Sobic002G423600 Sobic002G423600 Sobic010G214200--Sobic002G423600 Sobic010G214200--Sobic003G310500 Sobic010G214200--SobicK044407 Sobic001G314800--Sobic001G195100 Sobic001G314800--Sobic006G014700 Sobic006G265000 Sobic006G265000 Sobic001G314800--Sobic006G265000 Sobic001G088300 Sobic001G088300 Sobic001G314800--Sobic001G088300 Sobic001G314800--Sobic002G407200 Sobic001G314800--Sobic008G018600 Sobic001G314800--Sobic003G296300 Sobic001G314800--Sobic003G310500 Sobic008G181300 Sobic008G181300 Sobic001G314800--Sobic008G181300 Sobic001G195100--Sobic001G314800 Sobic003G102200 Sobic003G102200 Sobic001G195100--Sobic003G102200 Sobic004G297100 Sobic004G297100 Sobic001G195100--Sobic004G297100 Sobic001G059400 Sobic001G059400 Sobic001G195100--Sobic001G059400 Sobic007G118301 Sobic007G118301 Sobic001G195100--Sobic007G118301 Sobic007G090300 Sobic007G090300 Sobic001G195100--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic001G195100--Sobic005G109000 Sobic001G195100--Sobic001G088300 Sobic001G195100--Sobic003G296300 Sobic003G310500--Sobic001G056500 Sobic003G310500--Sobic008G038100 Sobic003G310500--Sobic004G209500 Sobic003G310500--Sobic010G214200 Sobic003G310500--Sobic009G216050 Sobic003G310500--Sobic002G216500 Sobic003G310500--Sobic006G045000 Sobic003G310500--Sobic008G181300 Sobic003G310500--Sobic006G014700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.