Gene annotation
Transcriptome id Sobic.001G345400.1
Synonym Sb01g033150, ATL3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ring-H2 zinc finger protein, putative, expressed
UniProt C5WXJ9
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF109
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72310 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g28080.1 : ring-H2 zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a002772
Brachypodium KQK21365
Barley HORVU5Hr1G096480.1
Wheat TraesCS5A02G396000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296300 WRKY13, expressed -
2 Sobic.004G101000 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.009G038000 expressed protein -
4 Sobic.005G155600 LYK, putative, expressed -
5 Sobic.006G246100 one cut domain family member 3, putative, expressed -
6 Sobic.004G333300 serine-rich protein, putative, expressed -
7 Sobic.001G530350 - -
8 Sobic.009G192100 DUF567 domain containing protein, putative, expressed -
9 Sobic.008G038100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.008G181300 expressed protein -
11 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
12 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
13 Sobic.009G216050 - -
14 Sobic.001G314800 hydrolase, alpha/beta fold family protein, putative, expressed -
15 Sobic.008G025300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@DUF567 domain containing protein, putative, expressed -
16 Sobic.002G407200 sex determination protein tasselseed-2, putative, expressed -
17 Sobic.002G407700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
18 Sobic.004G195000 heavy metal transport/detoxification protein, putative, expressed -
19 Sobic.003G013600 expressed protein -
20 Sobic.004G110400 RING-H2 finger protein, putative, expressed -


Gene co-expression network
sample Sobic001G345400 Sobic001G345400 Sobic003G296300 Sobic003G296300 Sobic001G345400--Sobic003G296300 Sobic004G101000 Sobic004G101000 Sobic001G345400--Sobic004G101000 Sobic009G038000 Sobic009G038000 Sobic001G345400--Sobic009G038000 Sobic005G155600 Sobic005G155600 Sobic001G345400--Sobic005G155600 Sobic006G246100 Sobic006G246100 Sobic001G345400--Sobic006G246100 Sobic004G333300 Sobic004G333300 Sobic001G345400--Sobic004G333300 Sobic001G530350 Sobic001G530350 Sobic001G345400--Sobic001G530350 Sobic009G192100 Sobic009G192100 Sobic001G345400--Sobic009G192100 Sobic008G038100 Sobic008G038100 Sobic001G345400--Sobic008G038100 Sobic003G296300--Sobic001G345400 Sobic003G296300--Sobic006G246100 Sobic003G296300--Sobic004G101000 Sobic006G167800 Sobic006G167800 Sobic003G296300--Sobic006G167800 Sobic001G093900 Sobic001G093900 Sobic003G296300--Sobic001G093900 Sobic010G157500 Sobic010G157500 Sobic003G296300--Sobic010G157500 Sobic003G296300--Sobic009G038000 Sobic001G526000 Sobic001G526000 Sobic003G296300--Sobic001G526000 Sobic001G195100 Sobic001G195100 Sobic003G296300--Sobic001G195100 Sobic004G101000--Sobic001G345400 Sobic009G216050 Sobic009G216050 Sobic004G101000--Sobic009G216050 Sobic004G101000--Sobic003G296300 Sobic004G101000--Sobic009G038000 Sobic002G407200 Sobic002G407200 Sobic004G101000--Sobic002G407200 Sobic010G214200 Sobic010G214200 Sobic004G101000--Sobic010G214200 Sobic001G314800 Sobic001G314800 Sobic004G101000--Sobic001G314800 Sobic004G101000--Sobic001G195100 Sobic003G310500 Sobic003G310500 Sobic004G101000--Sobic003G310500 Sobic009G038000--Sobic004G101000 Sobic009G038000--Sobic001G345400 Sobic009G038000--Sobic003G296300 Sobic004G140000 Sobic004G140000 Sobic009G038000--Sobic004G140000 Sobic006G014700 Sobic006G014700 Sobic009G038000--Sobic006G014700 Sobic009G038000--Sobic002G407200 Sobic009G038000--Sobic008G038100 Sobic009G038000--Sobic001G314800 Sobic002G216500 Sobic002G216500 Sobic009G038000--Sobic002G216500 Sobic005G155600--Sobic001G345400 Sobic009G232266 Sobic009G232266 Sobic005G155600--Sobic009G232266 Sobic003G277500 Sobic003G277500 Sobic005G155600--Sobic003G277500 Sobic004G110400 Sobic004G110400 Sobic005G155600--Sobic004G110400 Sobic004G195000 Sobic004G195000 Sobic005G155600--Sobic004G195000 Sobic005G155600--Sobic003G296300 Sobic005G155600--Sobic006G246100 Sobic001G357500 Sobic001G357500 Sobic005G155600--Sobic001G357500 Sobic004G010300 Sobic004G010300 Sobic005G155600--Sobic004G010300 Sobic006G246100--Sobic003G296300 Sobic005G080200 Sobic005G080200 Sobic006G246100--Sobic005G080200 Sobic010G194300 Sobic010G194300 Sobic006G246100--Sobic010G194300 Sobic002G319100 Sobic002G319100 Sobic006G246100--Sobic002G319100 Sobic006G246100--Sobic001G345400 Sobic004G114400 Sobic004G114400 Sobic006G246100--Sobic004G114400 Sobic006G246100--Sobic004G010300 Sobic010G194900 Sobic010G194900 Sobic006G246100--Sobic010G194900 Sobic006G246100--Sobic004G195000 Sobic004G333300--Sobic001G345400 Sobic004G333300--Sobic009G216050 Sobic004G209500 Sobic004G209500 Sobic004G333300--Sobic004G209500 Sobic004G333300--Sobic008G038100 Sobic004G174000 Sobic004G174000 Sobic004G333300--Sobic004G174000 Sobic004G333300--Sobic003G310500 Sobic004G333300--Sobic004G110400 Sobic004G333300--Sobic001G314800 Sobic004G333300--Sobic004G101000 Sobic006G097800 Sobic006G097800 Sobic001G530350--Sobic006G097800 Sobic001G526900 Sobic001G526900 Sobic001G530350--Sobic001G526900 Sobic001G530350--Sobic003G296300 Sobic001G530350--Sobic001G093900 Sobic001G530350--Sobic001G345400 Sobic009G100800 Sobic009G100800 Sobic001G530350--Sobic009G100800 Sobic001G225600 Sobic001G225600 Sobic001G530350--Sobic001G225600 Sobic003G013600 Sobic003G013600 Sobic001G530350--Sobic003G013600 Sobic001G530350--Sobic006G246100 Sobic008G181300 Sobic008G181300 Sobic009G192100--Sobic008G181300 Sobic009G192100--Sobic002G407200 Sobic001G518800 Sobic001G518800 Sobic009G192100--Sobic001G518800 Sobic008G018600 Sobic008G018600 Sobic009G192100--Sobic008G018600 Sobic001G182600 Sobic001G182600 Sobic009G192100--Sobic001G182600 Sobic009G192100--Sobic008G038100 Sobic009G192100--Sobic001G345400 Sobic001G056500 Sobic001G056500 Sobic009G192100--Sobic001G056500 Sobic002G403300 Sobic002G403300 Sobic009G192100--Sobic002G403300 Sobic008G038100--Sobic001G056500 Sobic008G038100--Sobic003G310500 Sobic008G038100--Sobic009G216050 Sobic009G014600 Sobic009G014600 Sobic008G038100--Sobic009G014600 Sobic009G233900 Sobic009G233900 Sobic008G038100--Sobic009G233900 Sobic008G038100--Sobic008G181300 Sobic004G217700 Sobic004G217700 Sobic008G038100--Sobic004G217700 Sobic003G385500 Sobic003G385500 Sobic008G038100--Sobic003G385500 Sobic006G045000 Sobic006G045000 Sobic008G038100--Sobic006G045000
Octagon: transcription factors


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