Gene annotation
Transcriptome id Sobic.004G110400.1
Synonym
Functional annotation RING-H2 finger protein, putative, expressed
UniProt A0A194YP08
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF91
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G20030 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g15120.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a034455 , Zm00025a019957
Brachypodium PNT67786
Barley HORVU6Hr1G095010.1 , HORVU4Hr1G082740.1 , HORVU4Hr1G017610.1
Wheat TraesCS4B02G099300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
2 Sobic.001G314800 hydrolase, alpha/beta fold family protein, putative, expressed -
3 Sobic.001G526000 hydrolase, alpha/beta fold family protein, putative, expressed -
4 Sobic.004G333300 serine-rich protein, putative, expressed -
5 Sobic.005G155600 LYK, putative, expressed -
6 Sobic.003G296300 WRKY13, expressed -
7 Sobic.002G376000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
8 Sobic.002G269400 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
9 Sobic.001G345400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
10 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
11 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
12 Sobic.010G157500 zinc finger protein, putative, expressed -
13 Sobic.003G271201 - -
14 Sobic.001G088300 - -
15 Sobic.009G192100 DUF567 domain containing protein, putative, expressed -
16 Sobic.008G018600 harpin-induced protein 1 domain containing protein, expressed -
17 Sobic.003G013600 expressed protein -
18 Sobic.009G038000 expressed protein -
19 Sobic.008G181300 expressed protein -
20 Sobic.001G285000 - -


Gene co-expression network
sample Sobic004G110400 Sobic004G110400 Sobic006G167800 Sobic006G167800 Sobic004G110400--Sobic006G167800 Sobic001G314800 Sobic001G314800 Sobic004G110400--Sobic001G314800 Sobic001G526000 Sobic001G526000 Sobic004G110400--Sobic001G526000 Sobic004G333300 Sobic004G333300 Sobic004G110400--Sobic004G333300 Sobic005G155600 Sobic005G155600 Sobic004G110400--Sobic005G155600 Sobic003G296300 Sobic003G296300 Sobic004G110400--Sobic003G296300 Sobic002G376000 Sobic002G376000 Sobic004G110400--Sobic002G376000 Sobic002G269400 Sobic002G269400 Sobic004G110400--Sobic002G269400 Sobic001G345400 Sobic001G345400 Sobic004G110400--Sobic001G345400 Sobic006G167800--Sobic001G526000 Sobic006G167800--Sobic003G296300 Sobic006G167800--Sobic004G110400 Sobic006G167800--Sobic002G376000 Sobic010G157500 Sobic010G157500 Sobic006G167800--Sobic010G157500 Sobic001G093900 Sobic001G093900 Sobic006G167800--Sobic001G093900 Sobic009G067400 Sobic009G067400 Sobic006G167800--Sobic009G067400 Sobic001G195100 Sobic001G195100 Sobic006G167800--Sobic001G195100 Sobic001G144400 Sobic001G144400 Sobic006G167800--Sobic001G144400 Sobic001G314800--Sobic001G195100 Sobic006G014700 Sobic006G014700 Sobic001G314800--Sobic006G014700 Sobic006G265000 Sobic006G265000 Sobic001G314800--Sobic006G265000 Sobic001G088300 Sobic001G088300 Sobic001G314800--Sobic001G088300 Sobic002G407200 Sobic002G407200 Sobic001G314800--Sobic002G407200 Sobic008G018600 Sobic008G018600 Sobic001G314800--Sobic008G018600 Sobic001G314800--Sobic003G296300 Sobic003G310500 Sobic003G310500 Sobic001G314800--Sobic003G310500 Sobic008G181300 Sobic008G181300 Sobic001G314800--Sobic008G181300 Sobic001G526000--Sobic006G167800 Sobic001G526000--Sobic003G296300 Sobic001G526000--Sobic001G088300 Sobic001G526000--Sobic001G195100 Sobic009G100500 Sobic009G100500 Sobic001G526000--Sobic009G100500 Sobic001G526000--Sobic001G314800 Sobic006G259000 Sobic006G259000 Sobic001G526000--Sobic006G259000 Sobic007G090300 Sobic007G090300 Sobic001G526000--Sobic007G090300 Sobic001G526000--Sobic004G110400 Sobic004G333300--Sobic001G345400 Sobic009G216050 Sobic009G216050 Sobic004G333300--Sobic009G216050 Sobic004G209500 Sobic004G209500 Sobic004G333300--Sobic004G209500 Sobic008G038100 Sobic008G038100 Sobic004G333300--Sobic008G038100 Sobic004G174000 Sobic004G174000 Sobic004G333300--Sobic004G174000 Sobic004G333300--Sobic003G310500 Sobic004G333300--Sobic004G110400 Sobic004G333300--Sobic001G314800 Sobic004G101000 Sobic004G101000 Sobic004G333300--Sobic004G101000 Sobic005G155600--Sobic001G345400 Sobic009G232266 Sobic009G232266 Sobic005G155600--Sobic009G232266 Sobic003G277500 Sobic003G277500 Sobic005G155600--Sobic003G277500 Sobic005G155600--Sobic004G110400 Sobic004G195000 Sobic004G195000 Sobic005G155600--Sobic004G195000 Sobic005G155600--Sobic003G296300 Sobic006G246100 Sobic006G246100 Sobic005G155600--Sobic006G246100 Sobic001G357500 Sobic001G357500 Sobic005G155600--Sobic001G357500 Sobic004G010300 Sobic004G010300 Sobic005G155600--Sobic004G010300 Sobic003G296300--Sobic001G345400 Sobic003G296300--Sobic006G246100 Sobic003G296300--Sobic004G101000 Sobic003G296300--Sobic006G167800 Sobic003G296300--Sobic001G093900 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic003G296300--Sobic001G526000 Sobic003G296300--Sobic001G195100 Sobic002G376000--Sobic006G167800 Sobic001G288100 Sobic001G288100 Sobic002G376000--Sobic001G288100 Sobic010G179800 Sobic010G179800 Sobic002G376000--Sobic010G179800 Sobic002G376000--Sobic001G526000 Sobic002G376000--Sobic001G093900 Sobic001G024500 Sobic001G024500 Sobic002G376000--Sobic001G024500 Sobic002G376000--Sobic002G269400 Sobic002G376000--Sobic004G110400 Sobic001G075000 Sobic001G075000 Sobic002G376000--Sobic001G075000 Sobic002G269300 Sobic002G269300 Sobic002G269400--Sobic002G269300 Sobic002G269400--Sobic010G179800 Sobic002G269400--Sobic002G376000 Sobic002G269400--Sobic004G110400 Sobic002G269400--Sobic008G018600 Sobic002G269400--Sobic001G088300 Sobic002G269400--Sobic006G167800 Sobic002G269400--Sobic001G526000 Sobic005G063900 Sobic005G063900 Sobic002G269400--Sobic005G063900 Sobic001G345400--Sobic003G296300 Sobic001G345400--Sobic004G101000 Sobic001G345400--Sobic009G038000 Sobic001G345400--Sobic005G155600 Sobic001G345400--Sobic006G246100 Sobic001G345400--Sobic004G333300 Sobic001G530350 Sobic001G530350 Sobic001G345400--Sobic001G530350 Sobic009G192100 Sobic009G192100 Sobic001G345400--Sobic009G192100 Sobic001G345400--Sobic008G038100
Octagon: transcription factors


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