Gene annotation
Transcriptome id Sobic.001G526000.1
Synonym Sb01g048950
Functional annotation hydrolase, alpha/beta fold family protein, putative, expressed
UniProt C5X0V3
Pfam -
Panther DB PTHR34953 PTHR34953:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G40095 : Alpha/beta hydrolase related protein
RAP-DB (Rice) LOC_Os03g03200.2 : hydrolase, alpha/beta fold family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052242 , Zm00025a000324
Brachypodium KQK23912
Barley HORVU4Hr1G084600.4 , HORVU4Hr1G084600.6 , HORVU2Hr1G073450.6 , HORVU2Hr1G048950.6 , HORVU2Hr1G048950.7 , HORVU2Hr1G048950.4 , HORVU2Hr1G048950.5 , HORVU2Hr1G048950.2 , HORVU2Hr1G048950.3 , HORVU2Hr1G048950.1 , HORVU4Hr1G084600.1 , HORVU2Hr1G073450.3 , HORVU2Hr1G073450.2 , HORVU2Hr1G073450.5 , HORVU4Hr1G084600.5 , HORVU2Hr1G048950.8 , HORVU2Hr1G048950.9 , HORVU2Hr1G073450.7
Wheat TraesCS5A02G514800 , TraesCS4B02G345700 , TraesCS4D02G340800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
2 Sobic.003G296300 WRKY13, expressed -
3 Sobic.001G088300 - -
4 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
6 Sobic.001G314800 hydrolase, alpha/beta fold family protein, putative, expressed -
7 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
8 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G110400 RING-H2 finger protein, putative, expressed -
10 Sobic.002G376000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
11 Sobic.001G285000 - -
12 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
13 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
14 Sobic.002G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
15 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
16 Sobic.003G193800 calmodulin-binding protein, putative, expressed -
17 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
18 Sobic.001G288100 zinc-binding protein, putative, expressed -
19 Sobic.005G229400 GRAS family transcription factor domain containing protein, expressed -
20 Sobic.002G407700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -


Gene co-expression network
sample Sobic001G526000 Sobic001G526000 Sobic006G167800 Sobic006G167800 Sobic001G526000--Sobic006G167800 Sobic003G296300 Sobic003G296300 Sobic001G526000--Sobic003G296300 Sobic001G088300 Sobic001G088300 Sobic001G526000--Sobic001G088300 Sobic001G195100 Sobic001G195100 Sobic001G526000--Sobic001G195100 Sobic009G100500 Sobic009G100500 Sobic001G526000--Sobic009G100500 Sobic001G314800 Sobic001G314800 Sobic001G526000--Sobic001G314800 Sobic006G259000 Sobic006G259000 Sobic001G526000--Sobic006G259000 Sobic007G090300 Sobic007G090300 Sobic001G526000--Sobic007G090300 Sobic004G110400 Sobic004G110400 Sobic001G526000--Sobic004G110400 Sobic006G167800--Sobic001G526000 Sobic006G167800--Sobic003G296300 Sobic006G167800--Sobic004G110400 Sobic002G376000 Sobic002G376000 Sobic006G167800--Sobic002G376000 Sobic010G157500 Sobic010G157500 Sobic006G167800--Sobic010G157500 Sobic001G093900 Sobic001G093900 Sobic006G167800--Sobic001G093900 Sobic009G067400 Sobic009G067400 Sobic006G167800--Sobic009G067400 Sobic006G167800--Sobic001G195100 Sobic001G144400 Sobic001G144400 Sobic006G167800--Sobic001G144400 Sobic001G345400 Sobic001G345400 Sobic003G296300--Sobic001G345400 Sobic006G246100 Sobic006G246100 Sobic003G296300--Sobic006G246100 Sobic004G101000 Sobic004G101000 Sobic003G296300--Sobic004G101000 Sobic003G296300--Sobic006G167800 Sobic003G296300--Sobic001G093900 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic003G296300--Sobic001G526000 Sobic003G296300--Sobic001G195100 Sobic001G088300--Sobic001G195100 Sobic001G088300--Sobic001G314800 Sobic002G403300 Sobic002G403300 Sobic001G088300--Sobic002G403300 Sobic009G136400 Sobic009G136400 Sobic001G088300--Sobic009G136400 Sobic001G088300--Sobic001G526000 Sobic003G102200 Sobic003G102200 Sobic001G088300--Sobic003G102200 Sobic009G181400 Sobic009G181400 Sobic001G088300--Sobic009G181400 Sobic007G118301 Sobic007G118301 Sobic001G088300--Sobic007G118301 Sobic002G269300 Sobic002G269300 Sobic001G088300--Sobic002G269300 Sobic001G195100--Sobic001G314800 Sobic001G195100--Sobic003G102200 Sobic004G297100 Sobic004G297100 Sobic001G195100--Sobic004G297100 Sobic001G059400 Sobic001G059400 Sobic001G195100--Sobic001G059400 Sobic001G195100--Sobic007G118301 Sobic001G195100--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic001G195100--Sobic005G109000 Sobic001G195100--Sobic001G088300 Sobic001G195100--Sobic003G296300 Sobic003G193800 Sobic003G193800 Sobic009G100500--Sobic003G193800 Sobic009G010400 Sobic009G010400 Sobic009G100500--Sobic009G010400 Sobic009G100500--Sobic007G090300 Sobic010G221032 Sobic010G221032 Sobic009G100500--Sobic010G221032 Sobic004G065900 Sobic004G065900 Sobic009G100500--Sobic004G065900 Sobic001G410100 Sobic001G410100 Sobic009G100500--Sobic001G410100 Sobic002G199500 Sobic002G199500 Sobic009G100500--Sobic002G199500 Sobic002G207300 Sobic002G207300 Sobic009G100500--Sobic002G207300 Sobic009G100500--Sobic006G259000 Sobic001G314800--Sobic001G195100 Sobic006G014700 Sobic006G014700 Sobic001G314800--Sobic006G014700 Sobic006G265000 Sobic006G265000 Sobic001G314800--Sobic006G265000 Sobic001G314800--Sobic001G088300 Sobic002G407200 Sobic002G407200 Sobic001G314800--Sobic002G407200 Sobic008G018600 Sobic008G018600 Sobic001G314800--Sobic008G018600 Sobic001G314800--Sobic003G296300 Sobic003G310500 Sobic003G310500 Sobic001G314800--Sobic003G310500 Sobic008G181300 Sobic008G181300 Sobic001G314800--Sobic008G181300 Sobic003G416500 Sobic003G416500 Sobic006G259000--Sobic003G416500 Sobic002G323900 Sobic002G323900 Sobic006G259000--Sobic002G323900 Sobic010G023200 Sobic010G023200 Sobic006G259000--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic006G259000--Sobic007G077100 Sobic010G105300 Sobic010G105300 Sobic006G259000--Sobic010G105300 Sobic001G064900 Sobic001G064900 Sobic006G259000--Sobic001G064900 Sobic001G489500 Sobic001G489500 Sobic006G259000--Sobic001G489500 Sobic004G086800 Sobic004G086800 Sobic006G259000--Sobic004G086800 Sobic009G217500 Sobic009G217500 Sobic006G259000--Sobic009G217500 Sobic007G090300--Sobic009G100500 Sobic007G090300--Sobic006G259000 Sobic007G090300--Sobic002G199500 Sobic007G090300--Sobic001G059400 Sobic010G102000 Sobic010G102000 Sobic007G090300--Sobic010G102000 Sobic003G352400 Sobic003G352400 Sobic007G090300--Sobic003G352400 Sobic002G232800 Sobic002G232800 Sobic007G090300--Sobic002G232800 Sobic002G138700 Sobic002G138700 Sobic007G090300--Sobic002G138700 Sobic003G341100 Sobic003G341100 Sobic007G090300--Sobic003G341100 Sobic004G110400--Sobic006G167800 Sobic004G110400--Sobic001G314800 Sobic004G110400--Sobic001G526000 Sobic004G333300 Sobic004G333300 Sobic004G110400--Sobic004G333300 Sobic005G155600 Sobic005G155600 Sobic004G110400--Sobic005G155600 Sobic004G110400--Sobic003G296300 Sobic004G110400--Sobic002G376000 Sobic002G269400 Sobic002G269400 Sobic004G110400--Sobic002G269400 Sobic004G110400--Sobic001G345400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.