Gene annotation
Transcriptome id Sobic.001G410100.2,Sobic.001G410100.1
Synonym ATMAPK3, Sb01g038750, ATMPK3, MPK3
Functional annotation CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
UniProt A0A1B6QNX6 , A0A1B6QNZ3
Pfam PF00069 PF07714
Panther DB PTHR24055 PTHR24055:SF214
NCBI CDD KOG0660; Mitogen-activated protein kinase
KEGG Orthology K04371; ERK, mitogen-activated protein kinase 1/3
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G45640 : mitogen-activated protein kinase 3
RAP-DB (Rice) LOC_Os03g17700.1 : CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
MaizeGDB (Corn) Zm00025a041559 , Zm00025a001942 , Zm00025a049992 , Zm00025a052699
Brachypodium KQK19569 , KQK22200
Barley HORVU4Hr1G057200.8 , HORVU4Hr1G057200.4 , HORVU4Hr1G057200.5 , HORVU4Hr1G057200.6 , HORVU4Hr1G057200.7 , HORVU4Hr1G057200.1 , HORVU4Hr1G057200.2 , HORVU4Hr1G057200.3 , HORVU7Hr1G023760.3 , HORVU7Hr1G023760.2 , HORVU7Hr1G023760.1
Wheat TraesCS7B02G009200 , TraesCS4D02G198600 , TraesCS4A02G106400 , TraesCS4B02G197800 , TraesCS7D02G106400 , TraesCS7A02G111300
Populus -


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cDNA sequences
Sobic.001G410100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
2 Sobic.002G207300 tetraspanin family protein, putative, expressed -
3 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
4 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
5 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
6 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
7 Sobic.009G044400 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
8 Sobic.007G212200 AN1-like zinc finger domain containing protein, expressed -
9 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
10 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
11 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
12 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
14 Sobic.007G145700 expressed protein -
15 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.006G192500 CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
17 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
18 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
19 Sobic.002G354900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed -
20 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G410100 Sobic001G410100 Sobic001G287600 Sobic001G287600 Sobic001G410100--Sobic001G287600 Sobic002G207300 Sobic002G207300 Sobic001G410100--Sobic002G207300 Sobic003G341100 Sobic003G341100 Sobic001G410100--Sobic003G341100 Sobic007G011000 Sobic007G011000 Sobic001G410100--Sobic007G011000 Sobic009G100500 Sobic009G100500 Sobic001G410100--Sobic009G100500 Sobic002G118600 Sobic002G118600 Sobic001G410100--Sobic002G118600 Sobic009G044400 Sobic009G044400 Sobic001G410100--Sobic009G044400 Sobic007G212200 Sobic007G212200 Sobic001G410100--Sobic007G212200 Sobic004G065900 Sobic004G065900 Sobic001G410100--Sobic004G065900 Sobic001G287600--Sobic001G410100 Sobic001G287600--Sobic004G065900 Sobic004G086800 Sobic004G086800 Sobic001G287600--Sobic004G086800 Sobic001G287600--Sobic002G207300 Sobic001G370600 Sobic001G370600 Sobic001G287600--Sobic001G370600 Sobic001G287600--Sobic007G011000 Sobic007G201100 Sobic007G201100 Sobic001G287600--Sobic007G201100 Sobic009G010400 Sobic009G010400 Sobic001G287600--Sobic009G010400 Sobic010G102000 Sobic010G102000 Sobic001G287600--Sobic010G102000 Sobic002G207300--Sobic004G065900 Sobic002G367900 Sobic002G367900 Sobic002G207300--Sobic002G367900 Sobic002G207300--Sobic007G201100 Sobic006G146500 Sobic006G146500 Sobic002G207300--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G294600 Sobic002G294600 Sobic002G207300--Sobic002G294600 Sobic002G207300--Sobic001G410100 Sobic001G095700 Sobic001G095700 Sobic002G207300--Sobic001G095700 Sobic009G217500 Sobic009G217500 Sobic003G341100--Sobic009G217500 Sobic007G145700 Sobic007G145700 Sobic003G341100--Sobic007G145700 Sobic003G341100--Sobic009G044400 Sobic007G077100 Sobic007G077100 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic001G341600 Sobic001G341600 Sobic003G341100--Sobic001G341600 Sobic006G273800 Sobic006G273800 Sobic003G341100--Sobic006G273800 Sobic010G023200 Sobic010G023200 Sobic003G341100--Sobic010G023200 Sobic003G341100--Sobic002G118600 Sobic007G011000--Sobic002G118600 Sobic002G330300 Sobic002G330300 Sobic007G011000--Sobic002G330300 Sobic010G228000 Sobic010G228000 Sobic007G011000--Sobic010G228000 Sobic007G011000--Sobic007G212200 Sobic004G280800 Sobic004G280800 Sobic007G011000--Sobic004G280800 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic004G025000 Sobic004G025000 Sobic007G011000--Sobic004G025000 Sobic003G193800 Sobic003G193800 Sobic009G100500--Sobic003G193800 Sobic009G100500--Sobic009G010400 Sobic007G090300 Sobic007G090300 Sobic009G100500--Sobic007G090300 Sobic010G221032 Sobic010G221032 Sobic009G100500--Sobic010G221032 Sobic009G100500--Sobic004G065900 Sobic009G100500--Sobic001G410100 Sobic002G199500 Sobic002G199500 Sobic009G100500--Sobic002G199500 Sobic009G100500--Sobic002G207300 Sobic006G259000 Sobic006G259000 Sobic009G100500--Sobic006G259000 Sobic001G147200 Sobic001G147200 Sobic002G118600--Sobic001G147200 Sobic002G118600--Sobic001G341600 Sobic002G118600--Sobic003G341100 Sobic002G118600--Sobic010G228000 Sobic002G374100 Sobic002G374100 Sobic002G118600--Sobic002G374100 Sobic001G290400 Sobic001G290400 Sobic002G118600--Sobic001G290400 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic009G044400--Sobic003G341100 Sobic006G078400 Sobic006G078400 Sobic009G044400--Sobic006G078400 Sobic009G044400--Sobic009G217500 Sobic009G044400--Sobic007G145700 Sobic009G044400--Sobic006G273800 Sobic009G044400--Sobic001G341600 Sobic001G035000 Sobic001G035000 Sobic009G044400--Sobic001G035000 Sobic003G361100 Sobic003G361100 Sobic009G044400--Sobic003G361100 Sobic001G192800 Sobic001G192800 Sobic009G044400--Sobic001G192800 Sobic007G212200--Sobic002G354900 Sobic007G212200--Sobic007G011000 Sobic009G204100 Sobic009G204100 Sobic007G212200--Sobic009G204100 Sobic007G212200--Sobic002G118600 Sobic002G245800 Sobic002G245800 Sobic007G212200--Sobic002G245800 Sobic007G212200--Sobic001G410100 Sobic007G212200--Sobic003G361100 Sobic006G089300 Sobic006G089300 Sobic007G212200--Sobic006G089300 Sobic003G353800 Sobic003G353800 Sobic007G212200--Sobic003G353800 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic004G065900--Sobic006G146500 Sobic004G065900--Sobic007G201100 Sobic004G065900--Sobic007G145700 Sobic004G065900--Sobic009G010400
Octagon: transcription factors


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