Gene annotation
Transcriptome id Sobic.002G407700.1
Synonym Sb02g042150
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
sex determination protein tasselseed-2, putative, expressed
UniProt C5X4U5
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF408
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G03140 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os07g46830.1 : sex determination protein tasselseed-2, putative, expressed
MaizeGDB (Corn) Zm00025a049065
Brachypodium KQJ83231 , KQK15447
Barley HORVU2Hr1G021320.1 , HORVU2Hr1G021320.2 , HORVU2Hr1G021320.3 , HORVU2Hr1G021320.4 , HORVU1Hr1G085930.1 , HORVU1Hr1G085930.2 , HORVU1Hr1G085930.3 , HORVU2Hr1G021540.3 , HORVU2Hr1G021540.8 , HORVU2Hr1G021540.9 , HORVU3Hr1G070660.6 , HORVU3Hr1G070660.7 , HORVU3Hr1G070660.4 , HORVU3Hr1G070660.5 , HORVU3Hr1G070660.2 , HORVU3Hr1G070660.3 , HORVU3Hr1G070660.1 , HORVU2Hr1G021540.4 , HORVU2Hr1G021540.5 , HORVU2Hr1G021540.6 , HORVU2Hr1G021540.7 , HORVU2Hr1G021540.2 , HORVU2Hr1G021540.10 , HORVU2Hr1G021270.4 , HORVU2Hr1G021270.5 , HORVU2Hr1G021270.2 , HORVU2Hr1G021270.3 , HORVU2Hr1G021270.1
Wheat TraesCS2B02G145200 , TraesCS2D02G124600 , TraesCS2B02G144200 , TraesCS2A02G123000 , TraesCS2D02G126000 , TraesCS2A02G121800 , TraesCS2B02G210900 , TraesCS7B02G011200 , TraesCS2B02G143900 , TraesCS7D02G108700 , TraesCS2D02G125900 , TraesCS2D02G124800 , TraesCS2A02G122900 , TraesCS7A02G113400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G044932 - -
2 Sobic.002G057600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G343900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
4 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
5 Sobic.004G195000 heavy metal transport/detoxification protein, putative, expressed -
6 Sobic.009G232266 - -
7 Sobic.003G296300 WRKY13, expressed -
8 Sobic.001G345400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
9 Sobic.005G228000 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
10 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
11 Sobic.002G373001 - -
12 Sobic.006G246100 one cut domain family member 3, putative, expressed -
13 Sobic.001G526000 hydrolase, alpha/beta fold family protein, putative, expressed -
14 Sobic.004G101000 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.004G010300 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
16 Sobic.003G162700 expressed protein -
17 Sobic.010G194900 bZIP transcription factor domain containing protein, expressed -
18 Sobic.004G186500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed -
19 Sobic.001G530350 - -
20 Sobic.007G196600 proteophosphoglycan ppg4, putative, expressed K13456: RPM1-interacting protein 4


Gene co-expression network
sample Sobic002G407700 Sobic002G407700 Sobic006G044932 Sobic006G044932 Sobic002G407700--Sobic006G044932 Sobic002G057600 Sobic002G057600 Sobic002G407700--Sobic002G057600 Sobic001G343900 Sobic001G343900 Sobic002G407700--Sobic001G343900 Sobic003G277500 Sobic003G277500 Sobic002G407700--Sobic003G277500 Sobic004G195000 Sobic004G195000 Sobic002G407700--Sobic004G195000 Sobic009G232266 Sobic009G232266 Sobic002G407700--Sobic009G232266 Sobic003G296300 Sobic003G296300 Sobic002G407700--Sobic003G296300 Sobic001G345400 Sobic001G345400 Sobic002G407700--Sobic001G345400 Sobic005G228000 Sobic005G228000 Sobic002G407700--Sobic005G228000 Sobic006G044932--Sobic003G277500 Sobic006G044932--Sobic001G343900 Sobic006G044932--Sobic002G407700 Sobic004G010300 Sobic004G010300 Sobic006G044932--Sobic004G010300 Sobic006G044932--Sobic005G228000 Sobic002G373001 Sobic002G373001 Sobic006G044932--Sobic002G373001 Sobic007G196600 Sobic007G196600 Sobic006G044932--Sobic007G196600 Sobic006G138500 Sobic006G138500 Sobic006G044932--Sobic006G138500 Sobic002G333300 Sobic002G333300 Sobic006G044932--Sobic002G333300 Sobic002G057600--Sobic002G407700 Sobic002G245800 Sobic002G245800 Sobic002G057600--Sobic002G245800 Sobic009G023200 Sobic009G023200 Sobic002G057600--Sobic009G023200 Sobic001G449700 Sobic001G449700 Sobic002G057600--Sobic001G449700 Sobic003G202200 Sobic003G202200 Sobic002G057600--Sobic003G202200 Sobic002G057600--Sobic002G373001 Sobic002G405600 Sobic002G405600 Sobic002G057600--Sobic002G405600 Sobic007G123300 Sobic007G123300 Sobic002G057600--Sobic007G123300 Sobic002G312400 Sobic002G312400 Sobic002G057600--Sobic002G312400 Sobic001G343900--Sobic006G044932 Sobic001G343900--Sobic002G407700 Sobic001G343900--Sobic007G196600 Sobic007G044300 Sobic007G044300 Sobic001G343900--Sobic007G044300 Sobic001G343900--Sobic005G228000 Sobic004G186500 Sobic004G186500 Sobic001G343900--Sobic004G186500 Sobic001G410100 Sobic001G410100 Sobic001G343900--Sobic001G410100 Sobic007G195701 Sobic007G195701 Sobic001G343900--Sobic007G195701 Sobic002G222800 Sobic002G222800 Sobic001G343900--Sobic002G222800 Sobic003G277500--Sobic006G044932 Sobic003G277500--Sobic004G010300 Sobic003G162700 Sobic003G162700 Sobic003G277500--Sobic003G162700 Sobic002G070200 Sobic002G070200 Sobic003G277500--Sobic002G070200 Sobic003G277500--Sobic002G407700 Sobic003G277500--Sobic009G232266 Sobic003G277500--Sobic002G373001 Sobic003G277500--Sobic002G333300 Sobic003G277500--Sobic004G195000 Sobic001G319200 Sobic001G319200 Sobic004G195000--Sobic001G319200 Sobic006G246100 Sobic006G246100 Sobic004G195000--Sobic006G246100 Sobic004G195000--Sobic003G277500 Sobic005G080200 Sobic005G080200 Sobic004G195000--Sobic005G080200 Sobic004G195000--Sobic003G296300 Sobic004G195000--Sobic002G407700 Sobic001G403300 Sobic001G403300 Sobic004G195000--Sobic001G403300 Sobic002G377100 Sobic002G377100 Sobic004G195000--Sobic002G377100 Sobic005G155600 Sobic005G155600 Sobic004G195000--Sobic005G155600 Sobic001G357500 Sobic001G357500 Sobic009G232266--Sobic001G357500 Sobic009G236800 Sobic009G236800 Sobic009G232266--Sobic009G236800 Sobic009G232266--Sobic003G277500 Sobic003G271201 Sobic003G271201 Sobic009G232266--Sobic003G271201 Sobic008G113000 Sobic008G113000 Sobic009G232266--Sobic008G113000 Sobic003G041600 Sobic003G041600 Sobic009G232266--Sobic003G041600 Sobic009G232266--Sobic005G155600 Sobic009G232266--Sobic004G010300 Sobic010G178200 Sobic010G178200 Sobic009G232266--Sobic010G178200 Sobic003G296300--Sobic001G345400 Sobic003G296300--Sobic006G246100 Sobic004G101000 Sobic004G101000 Sobic003G296300--Sobic004G101000 Sobic006G167800 Sobic006G167800 Sobic003G296300--Sobic006G167800 Sobic001G093900 Sobic001G093900 Sobic003G296300--Sobic001G093900 Sobic010G157500 Sobic010G157500 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic001G526000 Sobic001G526000 Sobic003G296300--Sobic001G526000 Sobic001G195100 Sobic001G195100 Sobic003G296300--Sobic001G195100 Sobic001G345400--Sobic003G296300 Sobic001G345400--Sobic004G101000 Sobic001G345400--Sobic009G038000 Sobic001G345400--Sobic005G155600 Sobic001G345400--Sobic006G246100 Sobic004G333300 Sobic004G333300 Sobic001G345400--Sobic004G333300 Sobic001G530350 Sobic001G530350 Sobic001G345400--Sobic001G530350 Sobic009G192100 Sobic009G192100 Sobic001G345400--Sobic009G192100 Sobic008G038100 Sobic008G038100 Sobic001G345400--Sobic008G038100 Sobic001G019900 Sobic001G019900 Sobic005G228000--Sobic001G019900 Sobic002G212200 Sobic002G212200 Sobic005G228000--Sobic002G212200 Sobic001G067601 Sobic001G067601 Sobic005G228000--Sobic001G067601 Sobic002G345300 Sobic002G345300 Sobic005G228000--Sobic002G345300 Sobic005G228000--Sobic009G023200 Sobic004G157000 Sobic004G157000 Sobic005G228000--Sobic004G157000 Sobic003G350300 Sobic003G350300 Sobic005G228000--Sobic003G350300 Sobic009G094450 Sobic009G094450 Sobic005G228000--Sobic009G094450 Sobic010G047400 Sobic010G047400 Sobic005G228000--Sobic010G047400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.