Gene annotation
Transcriptome id Sobic.002G057600.1
Synonym Sb02g004840
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XB71
Pfam -
Panther DB PTHR33983
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57450 : -
RAP-DB (Rice) LOC_Os03g52410.1 : expressed protein
MaizeGDB (Corn) Zm00025a016868
Brachypodium KQK13350 , KQK20527
Barley HORVU4Hr1G010770.7 , HORVU4Hr1G010770.6 , HORVU4Hr1G010770.1 , HORVU4Hr1G010770.2 , HORVU4Hr1G068530.1 , HORVU5Hr1G116220.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G057600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G407700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
2 Sobic.002G245800 AN1-like zinc finger domain containing protein, expressed -
3 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
4 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
5 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
6 Sobic.002G373001 - -
7 Sobic.002G405600 early response to dehydration 15, putative, expressed -
8 Sobic.007G123300 C1-like domain containing protein, expressed -
9 Sobic.002G312400 domain of unknown function domain containing protein, expressed -
10 Sobic.002G403300 expressed protein -
11 Sobic.004G157000 protein kinase domain containing protein, expressed K13430: serine/threonine-protein kinase PBS1
12 Sobic.004G192100 uncharacterized Cys-rich domain containing protein, putative, expressed -
13 Sobic.008G185400 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
14 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -
15 Sobic.009G046600 stress-related protein, putative, expressed -
16 Sobic.005G109000 cytochrome P450, putative, expressed -
17 Sobic.003G110200 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
18 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
19 Sobic.005G228000 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
20 Sobic.010G178200 hemoglobin-like protein HbO, putative, expressed -


Gene co-expression network
sample Sobic002G057600 Sobic002G057600 Sobic002G407700 Sobic002G407700 Sobic002G057600--Sobic002G407700 Sobic002G245800 Sobic002G245800 Sobic002G057600--Sobic002G245800 Sobic009G023200 Sobic009G023200 Sobic002G057600--Sobic009G023200 Sobic001G449700 Sobic001G449700 Sobic002G057600--Sobic001G449700 Sobic003G202200 Sobic003G202200 Sobic002G057600--Sobic003G202200 Sobic002G373001 Sobic002G373001 Sobic002G057600--Sobic002G373001 Sobic002G405600 Sobic002G405600 Sobic002G057600--Sobic002G405600 Sobic007G123300 Sobic007G123300 Sobic002G057600--Sobic007G123300 Sobic002G312400 Sobic002G312400 Sobic002G057600--Sobic002G312400 Sobic006G044932 Sobic006G044932 Sobic002G407700--Sobic006G044932 Sobic002G407700--Sobic002G057600 Sobic001G343900 Sobic001G343900 Sobic002G407700--Sobic001G343900 Sobic003G277500 Sobic003G277500 Sobic002G407700--Sobic003G277500 Sobic004G195000 Sobic004G195000 Sobic002G407700--Sobic004G195000 Sobic009G232266 Sobic009G232266 Sobic002G407700--Sobic009G232266 Sobic003G296300 Sobic003G296300 Sobic002G407700--Sobic003G296300 Sobic001G345400 Sobic001G345400 Sobic002G407700--Sobic001G345400 Sobic005G228000 Sobic005G228000 Sobic002G407700--Sobic005G228000 Sobic002G245800--Sobic002G405600 Sobic001G040200 Sobic001G040200 Sobic002G245800--Sobic001G040200 Sobic003G324400 Sobic003G324400 Sobic002G245800--Sobic003G324400 Sobic009G247900 Sobic009G247900 Sobic002G245800--Sobic009G247900 Sobic001G422900 Sobic001G422900 Sobic002G245800--Sobic001G422900 Sobic002G245800--Sobic009G023200 Sobic001G095300 Sobic001G095300 Sobic002G245800--Sobic001G095300 Sobic002G140300 Sobic002G140300 Sobic002G245800--Sobic002G140300 Sobic006G179500 Sobic006G179500 Sobic002G245800--Sobic006G179500 Sobic004G187900 Sobic004G187900 Sobic009G023200--Sobic004G187900 Sobic010G204600 Sobic010G204600 Sobic009G023200--Sobic010G204600 Sobic003G063200 Sobic003G063200 Sobic009G023200--Sobic003G063200 Sobic001G067601 Sobic001G067601 Sobic009G023200--Sobic001G067601 Sobic002G046100 Sobic002G046100 Sobic009G023200--Sobic002G046100 Sobic009G023200--Sobic002G245800 Sobic003G181500 Sobic003G181500 Sobic009G023200--Sobic003G181500 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic001G383700 Sobic001G383700 Sobic001G449700--Sobic001G383700 Sobic001G449700--Sobic003G202200 Sobic003G110200 Sobic003G110200 Sobic001G449700--Sobic003G110200 Sobic007G149300 Sobic007G149300 Sobic001G449700--Sobic007G149300 Sobic003G021500 Sobic003G021500 Sobic001G449700--Sobic003G021500 Sobic009G036000 Sobic009G036000 Sobic001G449700--Sobic009G036000 Sobic002G333400 Sobic002G333400 Sobic001G449700--Sobic002G333400 Sobic001G259700 Sobic001G259700 Sobic001G449700--Sobic001G259700 Sobic005G186100 Sobic005G186100 Sobic001G449700--Sobic005G186100 Sobic001G481100 Sobic001G481100 Sobic003G202200--Sobic001G481100 Sobic003G202200--Sobic009G247900 Sobic003G202200--Sobic001G383700 Sobic003G202200--Sobic001G449700 Sobic003G202200--Sobic003G021500 Sobic003G228900 Sobic003G228900 Sobic003G202200--Sobic003G228900 Sobic004G191400 Sobic004G191400 Sobic003G202200--Sobic004G191400 Sobic003G364600 Sobic003G364600 Sobic003G202200--Sobic003G364600 Sobic003G202200--Sobic009G036000 Sobic002G373001--Sobic001G449700 Sobic002G034500 Sobic002G034500 Sobic002G373001--Sobic002G034500 Sobic002G373001--Sobic003G021500 Sobic002G319500 Sobic002G319500 Sobic002G373001--Sobic002G319500 Sobic003G102200 Sobic003G102200 Sobic002G373001--Sobic003G102200 Sobic002G070200 Sobic002G070200 Sobic002G373001--Sobic002G070200 Sobic002G082600 Sobic002G082600 Sobic002G373001--Sobic002G082600 Sobic002G373001--Sobic002G333400 Sobic004G095600 Sobic004G095600 Sobic002G373001--Sobic004G095600 Sobic002G405600--Sobic002G245800 Sobic002G405600--Sobic003G324400 Sobic002G405600--Sobic003G202200 Sobic002G405600--Sobic010G204600 Sobic002G405600--Sobic009G247900 Sobic010G267600 Sobic010G267600 Sobic002G405600--Sobic010G267600 Sobic006G263600 Sobic006G263600 Sobic002G405600--Sobic006G263600 Sobic002G405600--Sobic001G259700 Sobic002G405600--Sobic001G095300 Sobic007G123300--Sobic001G449700 Sobic007G123300--Sobic003G202200 Sobic007G123300--Sobic003G364600 Sobic007G123300--Sobic003G021500 Sobic007G036900 Sobic007G036900 Sobic007G123300--Sobic007G036900 Sobic007G123300--Sobic007G149300 Sobic007G123300--Sobic002G245800 Sobic007G123300--Sobic009G247900 Sobic007G123300--Sobic001G383700 Sobic001G281400 Sobic001G281400 Sobic002G312400--Sobic001G281400 Sobic001G499300 Sobic001G499300 Sobic002G312400--Sobic001G499300 Sobic002G312400--Sobic004G187900 Sobic004G332900 Sobic004G332900 Sobic002G312400--Sobic004G332900 Sobic002G211900 Sobic002G211900 Sobic002G312400--Sobic002G211900 Sobic006G173900 Sobic006G173900 Sobic002G312400--Sobic006G173900 Sobic002G312400--Sobic002G082600 Sobic002G312400--Sobic009G023200 Sobic004G177700 Sobic004G177700 Sobic002G312400--Sobic004G177700
Octagon: transcription factors


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