Gene annotation
Transcriptome id Sobic.005G228000.1
Synonym VPS2.1, Sb05g027600
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5Y8J9
Pfam PF03357
Panther DB PTHR10476 PTHR10476:SF12
NCBI CDD KOG3230; Vacuolar assembly/sorting protein DID4
KEGG Orthology K12191; charged multivesicular body protein 2A
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT2G06530 : SNF7 family protein
RAP-DB (Rice) LOC_Os11g47710.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052741 , Zm00025a029096
Brachypodium KQJ87099
Barley -
Wheat TraesCS4A02G174700 , TraesCS4D02G141000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
2 Sobic.002G212200 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
3 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
4 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
5 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
6 Sobic.004G157000 protein kinase domain containing protein, expressed K13430: serine/threonine-protein kinase PBS1
7 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
8 Sobic.009G094450 - -
9 Sobic.010G047400 "HGW(Ortholog in rice:Li et al., 2012)"(PubMedID : 31659929)@proline-rich cell wall protein-like, putative, expressed -
10 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
11 Sobic.001G445800 expressed protein -
12 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
13 Sobic.006G192500 CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
14 Sobic.010G217900 diphthamide biosynthesis protein 3, putative, expressed K15455: DPH3, diphthamide biosynthesis protein 3
15 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
16 Sobic.005G092800 expressed protein -
17 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
18 Sobic.002G034500 ERD4 protein, putative, expressed -
19 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
20 Sobic.009G046600 stress-related protein, putative, expressed -


Gene co-expression network
sample Sobic005G228000 Sobic005G228000 Sobic001G019900 Sobic001G019900 Sobic005G228000--Sobic001G019900 Sobic002G212200 Sobic002G212200 Sobic005G228000--Sobic002G212200 Sobic001G067601 Sobic001G067601 Sobic005G228000--Sobic001G067601 Sobic002G345300 Sobic002G345300 Sobic005G228000--Sobic002G345300 Sobic009G023200 Sobic009G023200 Sobic005G228000--Sobic009G023200 Sobic004G157000 Sobic004G157000 Sobic005G228000--Sobic004G157000 Sobic003G350300 Sobic003G350300 Sobic005G228000--Sobic003G350300 Sobic009G094450 Sobic009G094450 Sobic005G228000--Sobic009G094450 Sobic010G047400 Sobic010G047400 Sobic005G228000--Sobic010G047400 Sobic001G019900--Sobic001G067601 Sobic001G019900--Sobic005G228000 Sobic001G019900--Sobic009G023200 Sobic001G019900--Sobic003G350300 Sobic003G249800 Sobic003G249800 Sobic001G019900--Sobic003G249800 Sobic002G046100 Sobic002G046100 Sobic001G019900--Sobic002G046100 Sobic001G445800 Sobic001G445800 Sobic001G019900--Sobic001G445800 Sobic001G019900--Sobic002G212200 Sobic003G321700 Sobic003G321700 Sobic001G019900--Sobic003G321700 Sobic002G212200--Sobic005G228000 Sobic002G212200--Sobic001G019900 Sobic002G212200--Sobic001G067601 Sobic007G107000 Sobic007G107000 Sobic002G212200--Sobic007G107000 Sobic003G181500 Sobic003G181500 Sobic002G212200--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic002G212200--Sobic003G162700 Sobic002G212200--Sobic009G023200 Sobic002G282400 Sobic002G282400 Sobic002G212200--Sobic002G282400 Sobic001G064800 Sobic001G064800 Sobic002G212200--Sobic001G064800 Sobic001G067601--Sobic001G019900 Sobic001G067601--Sobic009G023200 Sobic001G067601--Sobic002G046100 Sobic010G217900 Sobic010G217900 Sobic001G067601--Sobic010G217900 Sobic003G063200 Sobic003G063200 Sobic001G067601--Sobic003G063200 Sobic001G037000 Sobic001G037000 Sobic001G067601--Sobic001G037000 Sobic001G067601--Sobic005G228000 Sobic001G067601--Sobic003G181500 Sobic001G067601--Sobic003G162700 Sobic002G345300--Sobic002G046100 Sobic002G345300--Sobic003G350300 Sobic001G281400 Sobic001G281400 Sobic002G345300--Sobic001G281400 Sobic010G178200 Sobic010G178200 Sobic002G345300--Sobic010G178200 Sobic002G267500 Sobic002G267500 Sobic002G345300--Sobic002G267500 Sobic003G253000 Sobic003G253000 Sobic002G345300--Sobic003G253000 Sobic003G285800 Sobic003G285800 Sobic002G345300--Sobic003G285800 Sobic004G272800 Sobic004G272800 Sobic002G345300--Sobic004G272800 Sobic010G149300 Sobic010G149300 Sobic002G345300--Sobic010G149300 Sobic004G187900 Sobic004G187900 Sobic009G023200--Sobic004G187900 Sobic010G204600 Sobic010G204600 Sobic009G023200--Sobic010G204600 Sobic009G023200--Sobic003G063200 Sobic009G023200--Sobic001G067601 Sobic009G023200--Sobic002G046100 Sobic002G245800 Sobic002G245800 Sobic009G023200--Sobic002G245800 Sobic009G023200--Sobic003G181500 Sobic003G202200 Sobic003G202200 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic004G157000--Sobic010G204600 Sobic009G046600 Sobic009G046600 Sobic004G157000--Sobic009G046600 Sobic004G157000--Sobic003G249800 Sobic004G157000--Sobic002G046100 Sobic009G129000 Sobic009G129000 Sobic004G157000--Sobic009G129000 Sobic004G157000--Sobic009G023200 Sobic009G033700 Sobic009G033700 Sobic004G157000--Sobic009G033700 Sobic004G157000--Sobic002G345300 Sobic004G157000--Sobic003G285800 Sobic003G350300--Sobic004G187900 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G350300--Sobic003G285800 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic010G086200 Sobic010G086200 Sobic003G350300--Sobic010G086200 Sobic003G350300--Sobic003G181500 Sobic009G094450--Sobic005G228000 Sobic010G153100 Sobic010G153100 Sobic009G094450--Sobic010G153100 Sobic005G092800 Sobic005G092800 Sobic009G094450--Sobic005G092800 Sobic009G094450--Sobic001G019900 Sobic004G026400 Sobic004G026400 Sobic009G094450--Sobic004G026400 Sobic009G094450--Sobic001G445800 Sobic009G094450--Sobic001G067601 Sobic009G094450--Sobic010G217900 Sobic009G094450--Sobic003G321700 Sobic010G047400--Sobic005G228000 Sobic010G204300 Sobic010G204300 Sobic010G047400--Sobic010G204300 Sobic010G047400--Sobic001G019900 Sobic010G047400--Sobic004G157000 Sobic010G047400--Sobic010G217900 Sobic010G047400--Sobic001G064800 Sobic001G283500 Sobic001G283500 Sobic010G047400--Sobic001G283500 Sobic010G047400--Sobic003G249800 Sobic010G047400--Sobic002G212200
Octagon: transcription factors


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