Gene annotation
Transcriptome id Sobic.002G138700.1
Synonym Sb02g012580
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
C2 domain containing protein, putative, expressed
UniProt C5X6M3
Pfam PF00168
Panther DB PTHR32246 PTHR32246:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G23950 : Calcium-dependent lipid-binding (CaLB domain) family protein
RAP-DB (Rice) LOC_Os08g44850.1 : C2 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a046048 , Zm00025a005556 , Zm00025a010763 , Zm00025a013483
Brachypodium KQJ91640 , KQJ94675
Barley HORVU4Hr1G000850.7 , HORVU4Hr1G000850.6 , HORVU4Hr1G000850.1 , HORVU4Hr1G000850.3 , HORVU4Hr1G000850.2 , HORVU6Hr1G020740.1 , HORVU6Hr1G020750.2 , HORVU6Hr1G020750.3 , HORVU4Hr1G000850.5 , HORVU4Hr1G000850.4
Wheat TraesCS7D02G509700 , TraesCS4D02G001900 , TraesCS7B02G436800
Populus -


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cDNA sequences
Sobic.002G138700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
2 Sobic.001G084000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY3, expressed -
3 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
5 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
6 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.003G416500 SRC2 protein, putative, expressed -
8 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
9 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
10 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
11 Sobic.001G314800 hydrolase, alpha/beta fold family protein, putative, expressed -
12 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
13 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
14 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.003G193800 calmodulin-binding protein, putative, expressed -
17 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
18 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
20 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic002G138700 Sobic002G138700 Sobic006G259000 Sobic006G259000 Sobic002G138700--Sobic006G259000 Sobic001G084000 Sobic001G084000 Sobic002G138700--Sobic001G084000 Sobic007G090300 Sobic007G090300 Sobic002G138700--Sobic007G090300 Sobic004G086800 Sobic004G086800 Sobic002G138700--Sobic004G086800 Sobic010G102000 Sobic010G102000 Sobic002G138700--Sobic010G102000 Sobic001G195100 Sobic001G195100 Sobic002G138700--Sobic001G195100 Sobic003G416500 Sobic003G416500 Sobic002G138700--Sobic003G416500 Sobic009G010400 Sobic009G010400 Sobic002G138700--Sobic009G010400 Sobic001G287600 Sobic001G287600 Sobic002G138700--Sobic001G287600 Sobic006G259000--Sobic003G416500 Sobic002G323900 Sobic002G323900 Sobic006G259000--Sobic002G323900 Sobic010G023200 Sobic010G023200 Sobic006G259000--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic006G259000--Sobic007G077100 Sobic010G105300 Sobic010G105300 Sobic006G259000--Sobic010G105300 Sobic001G064900 Sobic001G064900 Sobic006G259000--Sobic001G064900 Sobic001G489500 Sobic001G489500 Sobic006G259000--Sobic001G489500 Sobic006G259000--Sobic004G086800 Sobic009G217500 Sobic009G217500 Sobic006G259000--Sobic009G217500 Sobic001G084000--Sobic002G138700 Sobic001G314800 Sobic001G314800 Sobic001G084000--Sobic001G314800 Sobic006G098600 Sobic006G098600 Sobic001G084000--Sobic006G098600 Sobic005G175300 Sobic005G175300 Sobic001G084000--Sobic005G175300 Sobic001G084000--Sobic001G287600 Sobic001G084000--Sobic007G090300 Sobic004G331800 Sobic004G331800 Sobic001G084000--Sobic004G331800 Sobic007G139900 Sobic007G139900 Sobic001G084000--Sobic007G139900 Sobic001G084000--Sobic004G086800 Sobic009G100500 Sobic009G100500 Sobic007G090300--Sobic009G100500 Sobic007G090300--Sobic006G259000 Sobic002G199500 Sobic002G199500 Sobic007G090300--Sobic002G199500 Sobic001G059400 Sobic001G059400 Sobic007G090300--Sobic001G059400 Sobic007G090300--Sobic010G102000 Sobic003G352400 Sobic003G352400 Sobic007G090300--Sobic003G352400 Sobic002G232800 Sobic002G232800 Sobic007G090300--Sobic002G232800 Sobic007G090300--Sobic002G138700 Sobic003G341100 Sobic003G341100 Sobic007G090300--Sobic003G341100 Sobic004G086800--Sobic009G010400 Sobic004G086800--Sobic003G416500 Sobic004G086800--Sobic006G259000 Sobic004G065900 Sobic004G065900 Sobic004G086800--Sobic004G065900 Sobic004G086800--Sobic002G323900 Sobic004G086800--Sobic001G489500 Sobic004G086800--Sobic010G102000 Sobic004G086800--Sobic002G138700 Sobic004G086800--Sobic001G287600 Sobic010G102000--Sobic009G217500 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic007G145700 Sobic007G145700 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic006G273800 Sobic006G273800 Sobic010G102000--Sobic006G273800 Sobic001G195100--Sobic001G314800 Sobic003G102200 Sobic003G102200 Sobic001G195100--Sobic003G102200 Sobic004G297100 Sobic004G297100 Sobic001G195100--Sobic004G297100 Sobic001G195100--Sobic001G059400 Sobic007G118301 Sobic007G118301 Sobic001G195100--Sobic007G118301 Sobic001G195100--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic001G195100--Sobic005G109000 Sobic001G088300 Sobic001G088300 Sobic001G195100--Sobic001G088300 Sobic003G296300 Sobic003G296300 Sobic001G195100--Sobic003G296300 Sobic003G416500--Sobic001G489500 Sobic003G416500--Sobic010G023200 Sobic003G416500--Sobic006G259000 Sobic003G416500--Sobic007G077100 Sobic003G416500--Sobic009G217500 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic003G416500--Sobic002G323900 Sobic003G416500--Sobic010G105300 Sobic009G010400--Sobic004G086800 Sobic009G010400--Sobic004G065900 Sobic009G010400--Sobic001G064900 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic009G010400--Sobic006G259000 Sobic001G095700 Sobic001G095700 Sobic009G010400--Sobic001G095700 Sobic009G010400--Sobic010G102000 Sobic004G006500 Sobic004G006500 Sobic009G010400--Sobic004G006500 Sobic001G410100 Sobic001G410100 Sobic001G287600--Sobic001G410100 Sobic001G287600--Sobic004G065900 Sobic001G287600--Sobic004G086800 Sobic002G207300 Sobic002G207300 Sobic001G287600--Sobic002G207300 Sobic001G370600 Sobic001G370600 Sobic001G287600--Sobic001G370600 Sobic007G011000 Sobic007G011000 Sobic001G287600--Sobic007G011000 Sobic007G201100 Sobic007G201100 Sobic001G287600--Sobic007G201100 Sobic001G287600--Sobic009G010400 Sobic001G287600--Sobic010G102000
Octagon: transcription factors


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