Gene annotation
Transcriptome id Sobic.007G035500.1
Synonym Sb07g003040,
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
Protein aromatic-L-amino-acid decarboxylase (Os) (PubMedID : 27208977)
Up-reguralion under drought (PubMedID : 24916767)
Up-reguralion under heat (PubMedID : 24916767)
Up-reguralion under combine stress of drought and heat (PubMedID : 24916767)
decarboxylase, putative, expressed
UniProt C5YN26
Pfam PF00282
Panther DB PTHR11999 PTHR11999:SF93
NCBI CDD -
KEGG Orthology K01592; tyrosine decarboxylase
Gene Ontology GO:0016831; carboxy-lyase activity


Orthologs (automatic annotation)
TAIR AT2G20340 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os08g04540.1 : decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a029244 , Zm00025a055250 , Zm00025a055249
Brachypodium KQJ95025 , KQK02569 , KQJ95028 , KQJ95026 , KQJ95027 , KQJ95032
Barley HORVU7Hr1G010850.3 , HORVU7Hr1G010850.2 , HORVU7Hr1G010850.1 , HORVU7Hr1G010850.7 , HORVU7Hr1G010850.6 , HORVU7Hr1G010850.5 , HORVU7Hr1G010850.4 , HORVU2Hr1G114450.1 , HORVU2Hr1G114450.2 , HORVU3Hr1G005810.1 , HORVU3Hr1G005810.2 , HORVU2Hr1G114440.3 , HORVU2Hr1G114440.1 , HORVU3Hr1G005820.1 , HORVU3Hr1G005820.2 , HORVU3Hr1G005820.3 , HORVU2Hr1G114400.1 , HORVU2Hr1G114440.2 , HORVU7Hr1G091860.1 , HORVU2Hr1G114390.3 , HORVU2Hr1G114390.1 , HORVU7Hr1G091860.2 , HORVU4Hr1G089400.1 , HORVU4Hr1G089400.2 , HORVU1Hr1G010120.1 , HORVU1Hr1G010120.2
Wheat TraesCS7D02G538800 , TraesCS3D02G019200 , TraesCS3B02G016900 , TraesCS6A02G388400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G314800 hydrolase, alpha/beta fold family protein, putative, expressed -
2 Sobic.006G014700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
3 Sobic.002G160600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
4 Sobic.002G407200 sex determination protein tasselseed-2, putative, expressed -
5 Sobic.004G297600 triacylglycerol lipase like protein, putative, expressed -
6 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
8 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
9 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
10 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
11 Sobic.009G136400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha/beta hydrolase fold, putative, expressed -
12 Sobic.001G088300 - -
13 Sobic.009G151900 expressed protein -
14 Sobic.002G216500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
15 Sobic.005G103600 - -
16 Sobic.002G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
17 Sobic.009G067400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G232800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
19 Sobic.002G199500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CaM - probable calciumbinding protein CML45(PubMedID : 31721651)@EF hand family protein, putative, expressed K02183: calmodulin
20 Sobic.001G518800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic007G035500 Sobic007G035500 Sobic001G314800 Sobic001G314800 Sobic007G035500--Sobic001G314800 Sobic006G014700 Sobic006G014700 Sobic007G035500--Sobic006G014700 Sobic002G160600 Sobic002G160600 Sobic007G035500--Sobic002G160600 Sobic002G407200 Sobic002G407200 Sobic007G035500--Sobic002G407200 Sobic004G297600 Sobic004G297600 Sobic007G035500--Sobic004G297600 Sobic001G195100 Sobic001G195100 Sobic007G035500--Sobic001G195100 Sobic010G102000 Sobic010G102000 Sobic007G035500--Sobic010G102000 Sobic009G010400 Sobic009G010400 Sobic007G035500--Sobic009G010400 Sobic010G105300 Sobic010G105300 Sobic007G035500--Sobic010G105300 Sobic001G314800--Sobic001G195100 Sobic001G314800--Sobic006G014700 Sobic006G265000 Sobic006G265000 Sobic001G314800--Sobic006G265000 Sobic001G088300 Sobic001G088300 Sobic001G314800--Sobic001G088300 Sobic001G314800--Sobic002G407200 Sobic008G018600 Sobic008G018600 Sobic001G314800--Sobic008G018600 Sobic003G296300 Sobic003G296300 Sobic001G314800--Sobic003G296300 Sobic003G310500 Sobic003G310500 Sobic001G314800--Sobic003G310500 Sobic008G181300 Sobic008G181300 Sobic001G314800--Sobic008G181300 Sobic006G014700--Sobic001G314800 Sobic002G216500 Sobic002G216500 Sobic006G014700--Sobic002G216500 Sobic006G014700--Sobic002G160600 Sobic006G014700--Sobic003G310500 Sobic006G014700--Sobic006G265000 Sobic009G216050 Sobic009G216050 Sobic006G014700--Sobic009G216050 Sobic010G214200 Sobic010G214200 Sobic006G014700--Sobic010G214200 Sobic006G014700--Sobic002G407200 Sobic006G014700--Sobic008G018600 Sobic007G064800 Sobic007G064800 Sobic002G160600--Sobic007G064800 Sobic002G160600--Sobic006G014700 Sobic005G218500 Sobic005G218500 Sobic002G160600--Sobic005G218500 Sobic002G160600--Sobic002G216500 Sobic002G160600--Sobic001G314800 Sobic008G075400 Sobic008G075400 Sobic002G160600--Sobic008G075400 Sobic004G140000 Sobic004G140000 Sobic002G160600--Sobic004G140000 Sobic002G160600--Sobic006G265000 Sobic007G183100 Sobic007G183100 Sobic002G160600--Sobic007G183100 Sobic002G407200--Sobic008G018600 Sobic001G056500 Sobic001G056500 Sobic002G407200--Sobic001G056500 Sobic002G407200--Sobic009G216050 Sobic004G217700 Sobic004G217700 Sobic002G407200--Sobic004G217700 Sobic004G101000 Sobic004G101000 Sobic002G407200--Sobic004G101000 Sobic002G407200--Sobic001G314800 Sobic002G407200--Sobic003G310500 Sobic009G192100 Sobic009G192100 Sobic002G407200--Sobic009G192100 Sobic008G038100 Sobic008G038100 Sobic002G407200--Sobic008G038100 Sobic006G257700 Sobic006G257700 Sobic004G297600--Sobic006G257700 Sobic004G297600--Sobic010G102000 Sobic004G297600--Sobic009G010400 Sobic004G297600--Sobic001G195100 Sobic004G297600--Sobic001G314800 Sobic004G297600--Sobic010G105300 Sobic001G489500 Sobic001G489500 Sobic004G297600--Sobic001G489500 Sobic002G341900 Sobic002G341900 Sobic004G297600--Sobic002G341900 Sobic001G064900 Sobic001G064900 Sobic004G297600--Sobic001G064900 Sobic001G195100--Sobic001G314800 Sobic003G102200 Sobic003G102200 Sobic001G195100--Sobic003G102200 Sobic004G297100 Sobic004G297100 Sobic001G195100--Sobic004G297100 Sobic001G059400 Sobic001G059400 Sobic001G195100--Sobic001G059400 Sobic007G118301 Sobic007G118301 Sobic001G195100--Sobic007G118301 Sobic007G090300 Sobic007G090300 Sobic001G195100--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic001G195100--Sobic005G109000 Sobic001G195100--Sobic001G088300 Sobic001G195100--Sobic003G296300 Sobic009G217500 Sobic009G217500 Sobic010G102000--Sobic009G217500 Sobic010G102000--Sobic010G105300 Sobic003G341100 Sobic003G341100 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic007G145700 Sobic007G145700 Sobic010G102000--Sobic007G145700 Sobic010G023200 Sobic010G023200 Sobic010G102000--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic010G102000--Sobic007G077100 Sobic006G273800 Sobic006G273800 Sobic010G102000--Sobic006G273800 Sobic004G086800 Sobic004G086800 Sobic009G010400--Sobic004G086800 Sobic004G065900 Sobic004G065900 Sobic009G010400--Sobic004G065900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic009G010400--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic009G010400--Sobic006G259000 Sobic001G095700 Sobic001G095700 Sobic009G010400--Sobic001G095700 Sobic009G010400--Sobic010G102000 Sobic004G006500 Sobic004G006500 Sobic009G010400--Sobic004G006500 Sobic010G105300--Sobic010G102000 Sobic010G105300--Sobic006G259000 Sobic003G416500 Sobic003G416500 Sobic010G105300--Sobic003G416500 Sobic010G105300--Sobic010G023200 Sobic010G105300--Sobic009G217500 Sobic010G105300--Sobic007G077100 Sobic010G105300--Sobic001G489500 Sobic010G105300--Sobic001G064900 Sobic010G105300--Sobic002G341900
Octagon: transcription factors


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