Gene annotation
Transcriptome id Sobic.009G151900.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6P996
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a043845
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
2 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.004G032300 OsSGL(Ortholog in rice:Wang et al. (2016))(PubMedID : 31659876)@DUF1645 domain containing protein, putative, expressed -
4 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
6 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.003G416500 SRC2 protein, putative, expressed -
8 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.010G071000 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.002G341900 - -
11 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
12 Sobic.010G234000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
13 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
14 Sobic.006G274300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
15 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.003G268900 STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.007G145700 expressed protein -
18 Sobic.001G196900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@CPuORF40 - conserved peptide uORF-containing transcript, expressed K14488: SAUR family protein
19 Sobic.002G232800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
20 Sobic.001G370600 expressed protein -


Gene co-expression network
sample Sobic009G151900 Sobic009G151900 Sobic006G273800 Sobic006G273800 Sobic009G151900--Sobic006G273800 Sobic009G217500 Sobic009G217500 Sobic009G151900--Sobic009G217500 Sobic004G032300 Sobic004G032300 Sobic009G151900--Sobic004G032300 Sobic010G023200 Sobic010G023200 Sobic009G151900--Sobic010G023200 Sobic001G064900 Sobic001G064900 Sobic009G151900--Sobic001G064900 Sobic001G095700 Sobic001G095700 Sobic009G151900--Sobic001G095700 Sobic003G416500 Sobic003G416500 Sobic009G151900--Sobic003G416500 Sobic007G077100 Sobic007G077100 Sobic009G151900--Sobic007G077100 Sobic010G071000 Sobic010G071000 Sobic009G151900--Sobic010G071000 Sobic006G273800--Sobic009G217500 Sobic006G273800--Sobic010G023200 Sobic006G273800--Sobic007G077100 Sobic003G341100 Sobic003G341100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic001G035000 Sobic001G035000 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic010G102000 Sobic010G102000 Sobic009G217500--Sobic010G102000 Sobic009G217500--Sobic003G416500 Sobic001G341600 Sobic001G341600 Sobic009G217500--Sobic001G341600 Sobic009G217500--Sobic001G035000 Sobic009G217500--Sobic001G064900 Sobic004G032300--Sobic010G234000 Sobic007G122500 Sobic007G122500 Sobic004G032300--Sobic007G122500 Sobic004G032300--Sobic001G035000 Sobic006G274300 Sobic006G274300 Sobic004G032300--Sobic006G274300 Sobic004G032300--Sobic006G273800 Sobic005G037000 Sobic005G037000 Sobic004G032300--Sobic005G037000 Sobic001G441100 Sobic001G441100 Sobic004G032300--Sobic001G441100 Sobic004G032300--Sobic009G217500 Sobic009G217600 Sobic009G217600 Sobic004G032300--Sobic009G217600 Sobic010G023200--Sobic007G077100 Sobic010G023200--Sobic009G217500 Sobic010G023200--Sobic003G416500 Sobic010G023200--Sobic006G273800 Sobic006G259000 Sobic006G259000 Sobic010G023200--Sobic006G259000 Sobic010G023200--Sobic010G071000 Sobic010G023200--Sobic003G341100 Sobic010G023200--Sobic001G064900 Sobic001G489500 Sobic001G489500 Sobic010G023200--Sobic001G489500 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic006G257700 Sobic006G257700 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G064900--Sobic001G095700 Sobic001G064900--Sobic003G341100 Sobic004G065900 Sobic004G065900 Sobic001G095700--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic001G095700--Sobic003G268900 Sobic002G294600 Sobic002G294600 Sobic001G095700--Sobic002G294600 Sobic002G367900 Sobic002G367900 Sobic001G095700--Sobic002G367900 Sobic007G145700 Sobic007G145700 Sobic001G095700--Sobic007G145700 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G095700--Sobic001G064900 Sobic001G095700--Sobic003G341100 Sobic003G416500--Sobic001G489500 Sobic003G416500--Sobic010G023200 Sobic003G416500--Sobic006G259000 Sobic003G416500--Sobic007G077100 Sobic003G416500--Sobic009G217500 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic002G323900 Sobic002G323900 Sobic003G416500--Sobic002G323900 Sobic010G105300 Sobic010G105300 Sobic003G416500--Sobic010G105300 Sobic007G077100--Sobic010G023200 Sobic007G077100--Sobic009G217500 Sobic007G077100--Sobic006G273800 Sobic007G077100--Sobic003G416500 Sobic007G077100--Sobic003G341100 Sobic007G077100--Sobic006G259000 Sobic007G077200 Sobic007G077200 Sobic007G077100--Sobic007G077200 Sobic007G077100--Sobic010G071000 Sobic007G077100--Sobic001G489500 Sobic010G071000--Sobic010G023200 Sobic010G071000--Sobic009G217500 Sobic010G071000--Sobic007G077100 Sobic002G232800 Sobic002G232800 Sobic010G071000--Sobic002G232800 Sobic010G071000--Sobic007G077200 Sobic010G071000--Sobic003G416500 Sobic010G071000--Sobic003G341100 Sobic010G071000--Sobic001G341600 Sobic010G209100 Sobic010G209100 Sobic010G071000--Sobic010G209100
Octagon: transcription factors


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