Gene annotation
Transcriptome id Sobic.003G213900.1
Synonym Sb03g027320
Functional annotation expressed protein
UniProt C5XQC5
Pfam -
Panther DB PTHR31460 PTHR31460:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01410 : NHL domain-containing protein
RAP-DB (Rice) LOC_Os01g42140.1 : expressed protein
MaizeGDB (Corn) Zm00025a028654 , Zm00025a038468
Brachypodium PNT72357 , PNT72353 , KQK08647 , PNT72356 , PNT72355 , PNT72354
Barley HORVU3Hr1G052980.2 , HORVU3Hr1G052980.1
Wheat TraesCS3D02G218700
Populus -


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cDNA sequences
Sobic.003G213900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G407200 sex determination protein tasselseed-2, putative, expressed -
2 Sobic.010G214200 OsFBK17 - F-box domain and kelch repeat containing protein, expressed -
3 Sobic.001G427700 anthranilate synthase component I-1, chloroplast precursor, putative, expressed K01657: anthranilate synthase component I
4 Sobic.006G014700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
5 Sobic.001G314800 hydrolase, alpha/beta fold family protein, putative, expressed -
6 Sobic.002G216500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.004G209500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.008G018600 harpin-induced protein 1 domain containing protein, expressed -
9 Sobic.009G216050 - -
10 Sobic.004G217700 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
11 Sobic.003G310500 DUF567 domain containing protein, putative, expressed -
12 Sobic.009G038000 expressed protein -
13 Sobic.004G101000 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.001G320700 prephenate dehydratase domain containing protein, expressed -
15 Sobic.006G265000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
16 Sobic.001G285000 - -
17 Sobic.008G142600 amino acid permease family protein, putative, expressed -
18 Sobic.002G160600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
19 Sobic.001G056500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
20 Sobic.003G248901 - -


Gene co-expression network
sample Sobic003G213900 Sobic003G213900 Sobic002G407200 Sobic002G407200 Sobic003G213900--Sobic002G407200 Sobic010G214200 Sobic010G214200 Sobic003G213900--Sobic010G214200 Sobic001G427700 Sobic001G427700 Sobic003G213900--Sobic001G427700 Sobic006G014700 Sobic006G014700 Sobic003G213900--Sobic006G014700 Sobic001G314800 Sobic001G314800 Sobic003G213900--Sobic001G314800 Sobic002G216500 Sobic002G216500 Sobic003G213900--Sobic002G216500 Sobic004G209500 Sobic004G209500 Sobic003G213900--Sobic004G209500 Sobic008G018600 Sobic008G018600 Sobic003G213900--Sobic008G018600 Sobic009G216050 Sobic009G216050 Sobic003G213900--Sobic009G216050 Sobic002G407200--Sobic008G018600 Sobic001G056500 Sobic001G056500 Sobic002G407200--Sobic001G056500 Sobic002G407200--Sobic009G216050 Sobic004G217700 Sobic004G217700 Sobic002G407200--Sobic004G217700 Sobic004G101000 Sobic004G101000 Sobic002G407200--Sobic004G101000 Sobic002G407200--Sobic001G314800 Sobic003G310500 Sobic003G310500 Sobic002G407200--Sobic003G310500 Sobic009G192100 Sobic009G192100 Sobic002G407200--Sobic009G192100 Sobic008G038100 Sobic008G038100 Sobic002G407200--Sobic008G038100 Sobic006G045000 Sobic006G045000 Sobic010G214200--Sobic006G045000 Sobic010G214200--Sobic004G209500 Sobic010G214200--Sobic004G217700 Sobic010G214200--Sobic001G056500 Sobic010G214200--Sobic002G216500 Sobic004G195800 Sobic004G195800 Sobic010G214200--Sobic004G195800 Sobic002G423600 Sobic002G423600 Sobic010G214200--Sobic002G423600 Sobic010G214200--Sobic003G310500 SobicK044407 SobicK044407 Sobic010G214200--SobicK044407 Sobic008G142600 Sobic008G142600 Sobic001G427700--Sobic008G142600 Sobic003G402200 Sobic003G402200 Sobic001G427700--Sobic003G402200 Sobic004G018400 Sobic004G018400 Sobic001G427700--Sobic004G018400 Sobic001G320700 Sobic001G320700 Sobic001G427700--Sobic001G320700 Sobic001G416300 Sobic001G416300 Sobic001G427700--Sobic001G416300 Sobic001G427700--Sobic003G213900 Sobic001G315800 Sobic001G315800 Sobic001G427700--Sobic001G315800 Sobic001G427700--Sobic004G217700 Sobic001G427700--Sobic010G214200 Sobic006G014700--Sobic001G314800 Sobic006G014700--Sobic002G216500 Sobic002G160600 Sobic002G160600 Sobic006G014700--Sobic002G160600 Sobic006G014700--Sobic003G310500 Sobic006G265000 Sobic006G265000 Sobic006G014700--Sobic006G265000 Sobic006G014700--Sobic009G216050 Sobic006G014700--Sobic010G214200 Sobic006G014700--Sobic002G407200 Sobic006G014700--Sobic008G018600 Sobic001G195100 Sobic001G195100 Sobic001G314800--Sobic001G195100 Sobic001G314800--Sobic006G014700 Sobic001G314800--Sobic006G265000 Sobic001G088300 Sobic001G088300 Sobic001G314800--Sobic001G088300 Sobic001G314800--Sobic002G407200 Sobic001G314800--Sobic008G018600 Sobic003G296300 Sobic003G296300 Sobic001G314800--Sobic003G296300 Sobic001G314800--Sobic003G310500 Sobic008G181300 Sobic008G181300 Sobic001G314800--Sobic008G181300 Sobic004G220600 Sobic004G220600 Sobic002G216500--Sobic004G220600 Sobic002G216500--Sobic006G045000 Sobic005G218500 Sobic005G218500 Sobic002G216500--Sobic005G218500 Sobic002G216500--Sobic010G214200 Sobic002G216500--Sobic004G209500 Sobic002G216500--Sobic006G014700 Sobic003G378301 Sobic003G378301 Sobic002G216500--Sobic003G378301 Sobic002G216500--Sobic003G310500 Sobic002G216500--Sobic004G217700 Sobic004G209500--Sobic009G216050 Sobic004G209500--Sobic006G045000 Sobic004G209500--Sobic010G214200 Sobic004G209500--Sobic003G310500 Sobic005G085500 Sobic005G085500 Sobic004G209500--Sobic005G085500 Sobic009G233900 Sobic009G233900 Sobic004G209500--Sobic009G233900 Sobic004G209500--Sobic002G216500 Sobic002G209100 Sobic002G209100 Sobic004G209500--Sobic002G209100 Sobic004G209500--Sobic004G217700 Sobic008G018600--Sobic002G407200 Sobic008G018600--Sobic001G056500 Sobic008G018600--Sobic004G195800 Sobic008G018600--Sobic009G216050 Sobic008G018600--Sobic010G214200 Sobic008G018600--Sobic004G217700 Sobic008G018600--Sobic001G314800 Sobic008G018600--Sobic008G181300 Sobic001G182600 Sobic001G182600 Sobic008G018600--Sobic001G182600 Sobic009G216050--Sobic004G209500 Sobic009G216050--Sobic006G045000 Sobic009G067400 Sobic009G067400 Sobic009G216050--Sobic009G067400 Sobic009G216050--Sobic004G101000 Sobic009G216050--Sobic004G217700 Sobic004G174000 Sobic004G174000 Sobic009G216050--Sobic004G174000 Sobic009G216050--SobicK044407 Sobic009G216050--Sobic002G407200 Sobic008G181801 Sobic008G181801 Sobic009G216050--Sobic008G181801
Octagon: transcription factors


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