Gene annotation
Transcriptome id Sobic.001G537700.1
Synonym Sb01g050040
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
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UniProt C5WMQ1
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF181
NCBI CDD KOG0331; ATP-dependent RNA helicase
KEGG Orthology K13179; DDX18, ATP-dependent RNA helicase DDX18/HAS1
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G06980 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os03g01830.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a004755 , Zm00025a053565 , Zm00025a011278
Brachypodium KQJ87838
Barley HORVU4Hr1G090840.3 , HORVU4Hr1G090840.2 , HORVU4Hr1G090840.1 , HORVU4Hr1G090840.4
Wheat TraesCS3B02G568500 , TraesCS4D02G359000 , TraesCS4D02G359000 , TraesCS5A02G548800 , TraesCS5A02G548800 , TraesCS5A02G548800
Populus -


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cDNA sequences
Sobic.001G537700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G039300 expressed protein -
2 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
3 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
4 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
5 Sobic.007G069400 pentatricopeptide, putative, expressed -
6 Sobic.001G388400 expressed protein -
7 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
8 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
9 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
11 Sobic.003G174100 phosphoesterase family protein, putative, expressed -
12 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
13 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
14 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
15 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
16 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
17 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
18 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
19 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
20 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -


Gene co-expression network
sample Sobic001G537700 Sobic001G537700 Sobic003G039300 Sobic003G039300 Sobic001G537700--Sobic003G039300 Sobic001G076200 Sobic001G076200 Sobic001G537700--Sobic001G076200 Sobic006G110200 Sobic006G110200 Sobic001G537700--Sobic006G110200 Sobic007G205600 Sobic007G205600 Sobic001G537700--Sobic007G205600 Sobic007G069400 Sobic007G069400 Sobic001G537700--Sobic007G069400 Sobic001G388400 Sobic001G388400 Sobic001G537700--Sobic001G388400 Sobic009G233800 Sobic009G233800 Sobic001G537700--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic001G537700--Sobic010G028000 Sobic002G114700 Sobic002G114700 Sobic001G537700--Sobic002G114700 Sobic003G039300--Sobic006G110200 Sobic003G084500 Sobic003G084500 Sobic003G039300--Sobic003G084500 Sobic003G039300--Sobic007G069400 Sobic001G161400 Sobic001G161400 Sobic003G039300--Sobic001G161400 Sobic003G039300--Sobic001G537700 Sobic009G137000 Sobic009G137000 Sobic003G039300--Sobic009G137000 Sobic010G211500 Sobic010G211500 Sobic003G039300--Sobic010G211500 Sobic006G237100 Sobic006G237100 Sobic003G039300--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic003G039300--Sobic007G015300 Sobic004G246800 Sobic004G246800 Sobic001G076200--Sobic004G246800 Sobic003G030400 Sobic003G030400 Sobic001G076200--Sobic003G030400 Sobic001G076200--Sobic001G537700 Sobic003G114100 Sobic003G114100 Sobic001G076200--Sobic003G114100 Sobic001G076200--Sobic009G233800 Sobic004G249500 Sobic004G249500 Sobic001G076200--Sobic004G249500 Sobic008G021700 Sobic008G021700 Sobic001G076200--Sobic008G021700 Sobic001G076200--Sobic002G114700 Sobic004G055600 Sobic004G055600 Sobic001G076200--Sobic004G055600 Sobic006G110200--Sobic003G039300 Sobic006G110200--Sobic007G069400 Sobic002G140000 Sobic002G140000 Sobic006G110200--Sobic002G140000 Sobic006G110200--Sobic001G537700 Sobic006G110200--Sobic009G137000 Sobic006G110200--Sobic007G015300 Sobic002G045700 Sobic002G045700 Sobic006G110200--Sobic002G045700 Sobic010G027200 Sobic010G027200 Sobic006G110200--Sobic010G027200 Sobic001G228300 Sobic001G228300 Sobic006G110200--Sobic001G228300 Sobic007G205600--Sobic001G388400 Sobic003G170200 Sobic003G170200 Sobic007G205600--Sobic003G170200 Sobic007G205600--Sobic001G537700 Sobic010G258300 Sobic010G258300 Sobic007G205600--Sobic010G258300 Sobic006G220600 Sobic006G220600 Sobic007G205600--Sobic006G220600 Sobic003G222600 Sobic003G222600 Sobic007G205600--Sobic003G222600 Sobic007G205600--Sobic010G211500 Sobic001G450600 Sobic001G450600 Sobic007G205600--Sobic001G450600 Sobic001G031300 Sobic001G031300 Sobic007G205600--Sobic001G031300 Sobic007G069400--Sobic003G039300 Sobic001G037500 Sobic001G037500 Sobic007G069400--Sobic001G037500 Sobic007G069400--Sobic006G110200 Sobic006G273400 Sobic006G273400 Sobic007G069400--Sobic006G273400 Sobic009G127400 Sobic009G127400 Sobic007G069400--Sobic009G127400 Sobic007G069400--Sobic002G114700 Sobic003G162800 Sobic003G162800 Sobic007G069400--Sobic003G162800 Sobic001G054100 Sobic001G054100 Sobic007G069400--Sobic001G054100 Sobic007G069400--Sobic001G537700 Sobic009G234200 Sobic009G234200 Sobic001G388400--Sobic009G234200 Sobic001G388400--Sobic010G028000 Sobic009G036300 Sobic009G036300 Sobic001G388400--Sobic009G036300 Sobic010G074200 Sobic010G074200 Sobic001G388400--Sobic010G074200 Sobic007G227600 Sobic007G227600 Sobic001G388400--Sobic007G227600 Sobic006G204100 Sobic006G204100 Sobic001G388400--Sobic006G204100 Sobic009G253000 Sobic009G253000 Sobic001G388400--Sobic009G253000 Sobic001G388400--Sobic009G233800 Sobic002G250100 Sobic002G250100 Sobic001G388400--Sobic002G250100 Sobic009G233800--Sobic010G074200 Sobic009G233800--Sobic006G204100 Sobic009G233800--Sobic001G388400 Sobic009G233800--Sobic004G055600 Sobic009G233800--Sobic003G030400 Sobic010G074100 Sobic010G074100 Sobic009G233800--Sobic010G074100 Sobic009G233800--Sobic009G137000 Sobic009G233800--Sobic001G076200 Sobic009G233800--Sobic010G028000 Sobic010G028000--Sobic001G388400 Sobic010G028000--Sobic009G234200 Sobic010G028000--Sobic006G204100 Sobic010G028000--Sobic010G074200 Sobic010G028000--Sobic009G036300 Sobic010G028000--Sobic007G227600 Sobic003G330100 Sobic003G330100 Sobic010G028000--Sobic003G330100 Sobic003G245800 Sobic003G245800 Sobic010G028000--Sobic003G245800 Sobic010G183400 Sobic010G183400 Sobic010G028000--Sobic010G183400 Sobic008G078900 Sobic008G078900 Sobic002G114700--Sobic008G078900 Sobic002G114700--Sobic003G114100 Sobic002G114700--Sobic006G273400 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic004G035000 Sobic004G035000 Sobic002G114700--Sobic004G035000 Sobic002G114700--Sobic007G205600
Octagon: transcription factors


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