Gene annotation
Transcriptome id Sobic.007G069400.2,Sobic.007G069400.1
Synonym Sb07g005470
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YIC9 , A0A1Z5R8G7 , A0A097PKM1
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF722
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G59040 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g09270.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a054812
Brachypodium KQJ95059
Barley HORVU3Hr1G114340.1 , HORVU3Hr1G114340.2 , HORVU3Hr1G114340.4 , HORVU3Hr1G114340.5 , HORVU3Hr1G114340.6
Wheat TraesCS3A02G523700 , TraesCS3D02G529200 , TraesCS3D02G529200 , TraesCS3D02G529200 , TraesCSU02G054500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G039300 expressed protein -
2 Sobic.001G037500 expressed protein -
3 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
4 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
5 Sobic.009G127400 PAC, putative, expressed -
6 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G162800 expressed protein -
8 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
9 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
10 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
11 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
12 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
13 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
14 Sobic.004G190900 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.001G028100 - -
16 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
17 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
18 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
19 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
20 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic007G069400 Sobic007G069400 Sobic003G039300 Sobic003G039300 Sobic007G069400--Sobic003G039300 Sobic001G037500 Sobic001G037500 Sobic007G069400--Sobic001G037500 Sobic006G110200 Sobic006G110200 Sobic007G069400--Sobic006G110200 Sobic006G273400 Sobic006G273400 Sobic007G069400--Sobic006G273400 Sobic009G127400 Sobic009G127400 Sobic007G069400--Sobic009G127400 Sobic002G114700 Sobic002G114700 Sobic007G069400--Sobic002G114700 Sobic003G162800 Sobic003G162800 Sobic007G069400--Sobic003G162800 Sobic001G054100 Sobic001G054100 Sobic007G069400--Sobic001G054100 Sobic001G537700 Sobic001G537700 Sobic007G069400--Sobic001G537700 Sobic003G039300--Sobic006G110200 Sobic003G084500 Sobic003G084500 Sobic003G039300--Sobic003G084500 Sobic003G039300--Sobic007G069400 Sobic001G161400 Sobic001G161400 Sobic003G039300--Sobic001G161400 Sobic003G039300--Sobic001G537700 Sobic009G137000 Sobic009G137000 Sobic003G039300--Sobic009G137000 Sobic010G211500 Sobic010G211500 Sobic003G039300--Sobic010G211500 Sobic006G237100 Sobic006G237100 Sobic003G039300--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic003G039300--Sobic007G015300 Sobic002G042500 Sobic002G042500 Sobic001G037500--Sobic002G042500 Sobic001G037500--Sobic001G054100 Sobic001G037500--Sobic006G273400 Sobic003G150800 Sobic003G150800 Sobic001G037500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic001G037500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic001G037500--Sobic004G206200 Sobic002G081500 Sobic002G081500 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic002G296100 Sobic002G296100 Sobic001G037500--Sobic002G296100 Sobic006G110200--Sobic003G039300 Sobic006G110200--Sobic007G069400 Sobic002G140000 Sobic002G140000 Sobic006G110200--Sobic002G140000 Sobic006G110200--Sobic001G537700 Sobic006G110200--Sobic009G137000 Sobic006G110200--Sobic007G015300 Sobic002G045700 Sobic002G045700 Sobic006G110200--Sobic002G045700 Sobic010G027200 Sobic010G027200 Sobic006G110200--Sobic010G027200 Sobic001G228300 Sobic001G228300 Sobic006G110200--Sobic001G228300 Sobic006G273400--Sobic001G037500 Sobic006G273400--Sobic001G054100 Sobic006G273400--Sobic004G206200 Sobic001G099000 Sobic001G099000 Sobic006G273400--Sobic001G099000 Sobic006G273400--Sobic002G081500 Sobic006G273400--Sobic003G084500 Sobic002G297400 Sobic002G297400 Sobic006G273400--Sobic002G297400 Sobic004G179200 Sobic004G179200 Sobic006G273400--Sobic004G179200 Sobic008G078900 Sobic008G078900 Sobic006G273400--Sobic008G078900 Sobic003G040000 Sobic003G040000 Sobic009G127400--Sobic003G040000 Sobic009G127400--Sobic007G069400 Sobic009G127400--Sobic001G037500 Sobic007G076700 Sobic007G076700 Sobic009G127400--Sobic007G076700 Sobic003G149300 Sobic003G149300 Sobic009G127400--Sobic003G149300 Sobic009G127400--Sobic002G114700 Sobic005G197300 Sobic005G197300 Sobic009G127400--Sobic005G197300 Sobic003G327200 Sobic003G327200 Sobic009G127400--Sobic003G327200 Sobic001G261573 Sobic001G261573 Sobic009G127400--Sobic001G261573 Sobic002G114700--Sobic008G078900 Sobic003G114100 Sobic003G114100 Sobic002G114700--Sobic003G114100 Sobic002G114700--Sobic006G273400 Sobic001G076200 Sobic001G076200 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic004G035000 Sobic004G035000 Sobic002G114700--Sobic004G035000 Sobic007G205600 Sobic007G205600 Sobic002G114700--Sobic007G205600 Sobic001G375000 Sobic001G375000 Sobic003G162800--Sobic001G375000 Sobic003G162800--Sobic003G327200 Sobic002G156100 Sobic002G156100 Sobic003G162800--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic003G162800--Sobic003G345900 Sobic002G181132 Sobic002G181132 Sobic003G162800--Sobic002G181132 Sobic004G003900 Sobic004G003900 Sobic003G162800--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic003G162800--Sobic010G027200 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic002G181000 Sobic002G181000 Sobic001G054100--Sobic002G181000 Sobic003G141100 Sobic003G141100 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic001G537700--Sobic003G039300 Sobic001G537700--Sobic001G076200 Sobic001G537700--Sobic006G110200 Sobic001G537700--Sobic007G205600 Sobic001G537700--Sobic007G069400 Sobic001G388400 Sobic001G388400 Sobic001G537700--Sobic001G388400 Sobic009G233800 Sobic009G233800 Sobic001G537700--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic001G537700--Sobic010G028000 Sobic001G537700--Sobic002G114700
Octagon: transcription factors


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