Gene annotation
Transcriptome id Sobic.001G028100.1,Sobic.001G028100.2
Synonym Sb01g002660, emb1138
Functional annotation -
UniProt A0A1B6QH27 , A0A1B6QH41
Pfam PF04851 PF00098 PF08152 PF00271
Panther DB PTHR24031 PTHR24031:SF155
NCBI CDD KOG0331; ATP-dependent RNA helicase
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0008270zinc ion binding GO:0003676nucleic acid binding GO:0005634nucleus GO:0004386helicase activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G26742 : DEAD box RNA helicase (RH3)
RAP-DB (Rice) LOC_Os03g61220.1 : DEAD-box ATP-dependent RNA helicase 3, putative, expressed
MaizeGDB (Corn) Zm00025a008888 , Zm00025a016398
Brachypodium KQK12356
Barley -
Wheat TraesCS5B02G504900 , TraesCS5B02G504900 , TraesCS5B02G504900
Populus -


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cDNA sequences
Sobic.001G028100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
2 Sobic.006G270200 smr domain containing protein, expressed K07456: DNA mismatch repair protein MutS2
3 Sobic.003G352500 ribonuclease protein, putative, expressed -
4 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
5 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
6 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
7 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
8 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
9 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
10 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
11 Sobic.002G168300 RGH2B, putative, expressed -
12 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
13 Sobic.003G334100 zinc finger family protein, putative, expressed -
14 Sobic.002G073200 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
15 Sobic.001G016100 pentatricopeptide, putative, expressed -
16 Sobic.004G333400 COBW domain containing protein, putative, expressed -
17 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
18 Sobic.004G248400 APO, putative, expressed -
19 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
20 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G028100 Sobic001G028100 Sobic001G054100 Sobic001G054100 Sobic001G028100--Sobic001G054100 Sobic006G270200 Sobic006G270200 Sobic001G028100--Sobic006G270200 Sobic003G352500 Sobic003G352500 Sobic001G028100--Sobic003G352500 Sobic002G181000 Sobic002G181000 Sobic001G028100--Sobic002G181000 Sobic007G185700 Sobic007G185700 Sobic001G028100--Sobic007G185700 Sobic010G002000 Sobic010G002000 Sobic001G028100--Sobic010G002000 Sobic008G039600 Sobic008G039600 Sobic001G028100--Sobic008G039600 Sobic003G232700 Sobic003G232700 Sobic001G028100--Sobic003G232700 Sobic002G043600 Sobic002G043600 Sobic001G028100--Sobic002G043600 Sobic001G054100--Sobic001G028100 Sobic003G372900 Sobic003G372900 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic003G141100 Sobic003G141100 Sobic001G054100--Sobic003G141100 Sobic001G054100--Sobic010G002000 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic006G270200--Sobic001G028100 Sobic006G270200--Sobic003G352500 Sobic006G270200--Sobic001G054100 Sobic006G270200--Sobic008G039600 Sobic006G270200--Sobic002G181000 Sobic006G270200--Sobic010G002000 Sobic001G220000 Sobic001G220000 Sobic006G270200--Sobic001G220000 Sobic003G094350 Sobic003G094350 Sobic006G270200--Sobic003G094350 Sobic006G270200--Sobic003G232700 Sobic003G352500--Sobic003G232700 Sobic003G352500--Sobic002G043600 Sobic003G352500--Sobic002G181000 Sobic003G352500--Sobic007G185700 Sobic003G352500--Sobic003G141100 Sobic003G352500--Sobic001G054100 Sobic003G352500--Sobic006G270200 Sobic003G352500--Sobic001G028100 Sobic001G500600 Sobic001G500600 Sobic003G352500--Sobic001G500600 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic007G185700--Sobic001G054100 Sobic003G234900 Sobic003G234900 Sobic007G185700--Sobic003G234900 Sobic007G185700--Sobic003G141100 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic001G530900 Sobic001G530900 Sobic007G185700--Sobic001G530900 Sobic007G185700--Sobic003G352500 Sobic001G261573 Sobic001G261573 Sobic007G185700--Sobic001G261573 Sobic005G231100 Sobic005G231100 Sobic007G185700--Sobic005G231100 Sobic010G002000--Sobic003G094350 Sobic010G002000--Sobic008G039600 Sobic010G002000--Sobic001G054100 Sobic010G002000--Sobic001G500600 Sobic002G401800 Sobic002G401800 Sobic010G002000--Sobic002G401800 Sobic010G002000--Sobic009G148500 Sobic005G143500 Sobic005G143500 Sobic010G002000--Sobic005G143500 Sobic004G336200 Sobic004G336200 Sobic010G002000--Sobic004G336200 Sobic010G002000--Sobic003G141100 Sobic008G039600--Sobic005G143500 Sobic008G039600--Sobic001G083100 Sobic006G106400 Sobic006G106400 Sobic008G039600--Sobic006G106400 Sobic008G039600--Sobic002G401800 Sobic002G272100 Sobic002G272100 Sobic008G039600--Sobic002G272100 Sobic008G039600--Sobic010G002000 Sobic001G368500 Sobic001G368500 Sobic008G039600--Sobic001G368500 Sobic008G039600--Sobic003G094350 Sobic008G039600--Sobic002G181000 Sobic003G232700--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic003G232700--Sobic006G197300 Sobic003G232700--Sobic002G181000 Sobic003G232700--Sobic002G043600 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G301300 Sobic003G301300 Sobic003G232700--Sobic003G301300 Sobic002G043600--Sobic003G232700 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic002G043600--Sobic003G352500 Sobic004G163800 Sobic004G163800 Sobic002G043600--Sobic004G163800 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic002G043600--Sobic005G231100
Octagon: transcription factors


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