Gene annotation
Transcriptome id Sobic.001G016100.1
Synonym Sb01g001570
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1Z5S4A0
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF915
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27610 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g62690.2 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK12164 , KQK13820
Barley HORVU5Hr1G120410.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G121000 expressed protein -
2 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
4 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
5 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
6 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
8 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
9 Sobic.001G028100 - -
10 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
11 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
12 Sobic.006G280800 expressed protein -
13 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
14 Sobic.001G016201 - -
15 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
16 Sobic.001G037500 expressed protein -
17 Sobic.006G142600 lipase class 3 family protein, putative, expressed -
18 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
19 Sobic.010G173400 down-regulated TF in developmental senescence(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
20 Sobic.001G540600 expressed protein -


Gene co-expression network
sample Sobic001G016100 Sobic001G016100 Sobic009G121000 Sobic009G121000 Sobic001G016100--Sobic009G121000 Sobic002G028400 Sobic002G028400 Sobic001G016100--Sobic002G028400 Sobic001G054100 Sobic001G054100 Sobic001G016100--Sobic001G054100 Sobic003G094350 Sobic003G094350 Sobic001G016100--Sobic003G094350 Sobic010G002000 Sobic010G002000 Sobic001G016100--Sobic010G002000 Sobic002G133900 Sobic002G133900 Sobic001G016100--Sobic002G133900 Sobic010G043800 Sobic010G043800 Sobic001G016100--Sobic010G043800 Sobic003G372900 Sobic003G372900 Sobic001G016100--Sobic003G372900 Sobic001G028100 Sobic001G028100 Sobic001G016100--Sobic001G028100 Sobic009G121000--Sobic010G043800 Sobic005G063000 Sobic005G063000 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic009G121000--Sobic006G142600 Sobic003G160800 Sobic003G160800 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic007G103400 Sobic007G103400 Sobic009G121000--Sobic007G103400 Sobic010G002700 Sobic010G002700 Sobic009G121000--Sobic010G002700 Sobic002G028400--Sobic002G133900 Sobic002G028400--Sobic003G094350 Sobic001G500600 Sobic001G500600 Sobic002G028400--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic002G028400--Sobic003G070900 Sobic009G170200 Sobic009G170200 Sobic002G028400--Sobic009G170200 Sobic008G074000 Sobic008G074000 Sobic002G028400--Sobic008G074000 Sobic001G540600 Sobic001G540600 Sobic002G028400--Sobic001G540600 Sobic003G287900 Sobic003G287900 Sobic002G028400--Sobic003G287900 Sobic002G028400--Sobic007G103400 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic002G181000 Sobic002G181000 Sobic001G054100--Sobic002G181000 Sobic003G141100 Sobic003G141100 Sobic001G054100--Sobic003G141100 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic005G100300 Sobic005G100300 Sobic003G094350--Sobic005G100300 Sobic003G094350--Sobic002G028400 Sobic004G336200 Sobic004G336200 Sobic003G094350--Sobic004G336200 Sobic003G094350--Sobic010G002000 Sobic004G353100 Sobic004G353100 Sobic003G094350--Sobic004G353100 Sobic010G002000--Sobic003G094350 Sobic008G039600 Sobic008G039600 Sobic010G002000--Sobic008G039600 Sobic010G002000--Sobic001G054100 Sobic010G002000--Sobic001G500600 Sobic002G401800 Sobic002G401800 Sobic010G002000--Sobic002G401800 Sobic009G148500 Sobic009G148500 Sobic010G002000--Sobic009G148500 Sobic005G143500 Sobic005G143500 Sobic010G002000--Sobic005G143500 Sobic010G002000--Sobic004G336200 Sobic010G002000--Sobic003G141100 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic002G133900--Sobic003G287900 Sobic002G405100 Sobic002G405100 Sobic002G133900--Sobic002G405100 Sobic002G133900--Sobic004G353100 Sobic002G133900--Sobic005G100300 Sobic002G133900--Sobic002G028400 Sobic002G133900--Sobic007G103400 Sobic002G133900--Sobic009G170200 Sobic010G043800--Sobic009G121000 Sobic007G136200 Sobic007G136200 Sobic010G043800--Sobic007G136200 Sobic001G504400 Sobic001G504400 Sobic010G043800--Sobic001G504400 Sobic010G043800--Sobic006G142600 Sobic010G043800--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic010G043800--Sobic006G158100 Sobic010G043800--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic010G043800--Sobic001G169900 Sobic001G378100 Sobic001G378100 Sobic010G043800--Sobic001G378100 Sobic003G372900--Sobic001G500600 Sobic003G372900--Sobic001G054100 Sobic003G372900--Sobic001G083100 Sobic002G406700 Sobic002G406700 Sobic003G372900--Sobic002G406700 Sobic003G372900--Sobic003G141100 Sobic003G372900--Sobic003G094350 Sobic003G372900--Sobic004G336200 Sobic004G333400 Sobic004G333400 Sobic003G372900--Sobic004G333400 Sobic006G280800 Sobic006G280800 Sobic003G372900--Sobic006G280800 Sobic001G028100--Sobic001G054100 Sobic006G270200 Sobic006G270200 Sobic001G028100--Sobic006G270200 Sobic003G352500 Sobic003G352500 Sobic001G028100--Sobic003G352500 Sobic001G028100--Sobic002G181000 Sobic001G028100--Sobic007G185700 Sobic001G028100--Sobic010G002000 Sobic001G028100--Sobic008G039600 Sobic003G232700 Sobic003G232700 Sobic001G028100--Sobic003G232700 Sobic002G043600 Sobic002G043600 Sobic001G028100--Sobic002G043600
Octagon: transcription factors


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