Gene annotation
Transcriptome id Sobic.006G270200.2,Sobic.006G270200.1
Synonym Sb06g033170
Functional annotation smr domain containing protein, expressed
UniProt A0A1Z5RFR1 , C5YAL7
Pfam PF01713 PF00488
Panther DB PTHR11361 PTHR11361:SF14
NCBI CDD KOG2830; Protein phosphatase 2A-associated protein
KEGG Orthology K07456; DNA mismatch repair protein MutS2
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding GO:0016887ATPase activity GO:0004519endonuclease activity


Orthologs (automatic annotation)
TAIR AT1G65070 : DNA mismatch repair protein MutS, type 2
RAP-DB (Rice) LOC_Os04g58410.1 : smr domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009267
Brachypodium KQJ85340
Barley HORVU2Hr1G118740.10 , HORVU2Hr1G118740.5 , HORVU2Hr1G118740.4 , HORVU2Hr1G118740.7 , HORVU2Hr1G118740.6 , HORVU2Hr1G118740.1 , HORVU2Hr1G118740.3 , HORVU2Hr1G118740.2 , HORVU2Hr1G118740.9 , HORVU2Hr1G118740.8
Wheat TraesCS2A02G588000 , TraesCS2A02G588000 , TraesCS2D02G565200
Populus -


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cDNA sequences
Sobic.006G270200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G028100 - -
2 Sobic.003G352500 ribonuclease protein, putative, expressed -
3 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
4 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
5 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
6 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
7 Sobic.001G220000 PPR repeat containing protein, expressed -
8 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
9 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
10 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
11 Sobic.006G197300 expressed protein -
12 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
13 Sobic.003G275200 methyltransferase domain containing protein, expressed -
14 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
15 Sobic.006G108200 expressed protein -
16 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
17 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
18 Sobic.001G016100 pentatricopeptide, putative, expressed -
19 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
20 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3


Gene co-expression network
sample Sobic006G270200 Sobic006G270200 Sobic001G028100 Sobic001G028100 Sobic006G270200--Sobic001G028100 Sobic003G352500 Sobic003G352500 Sobic006G270200--Sobic003G352500 Sobic001G054100 Sobic001G054100 Sobic006G270200--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic006G270200--Sobic008G039600 Sobic002G181000 Sobic002G181000 Sobic006G270200--Sobic002G181000 Sobic010G002000 Sobic010G002000 Sobic006G270200--Sobic010G002000 Sobic001G220000 Sobic001G220000 Sobic006G270200--Sobic001G220000 Sobic003G094350 Sobic003G094350 Sobic006G270200--Sobic003G094350 Sobic003G232700 Sobic003G232700 Sobic006G270200--Sobic003G232700 Sobic001G028100--Sobic001G054100 Sobic001G028100--Sobic006G270200 Sobic001G028100--Sobic003G352500 Sobic001G028100--Sobic002G181000 Sobic007G185700 Sobic007G185700 Sobic001G028100--Sobic007G185700 Sobic001G028100--Sobic010G002000 Sobic001G028100--Sobic008G039600 Sobic001G028100--Sobic003G232700 Sobic002G043600 Sobic002G043600 Sobic001G028100--Sobic002G043600 Sobic003G352500--Sobic003G232700 Sobic003G352500--Sobic002G043600 Sobic003G352500--Sobic002G181000 Sobic003G352500--Sobic007G185700 Sobic003G141100 Sobic003G141100 Sobic003G352500--Sobic003G141100 Sobic003G352500--Sobic001G054100 Sobic003G352500--Sobic006G270200 Sobic003G352500--Sobic001G028100 Sobic001G500600 Sobic001G500600 Sobic003G352500--Sobic001G500600 Sobic001G054100--Sobic001G028100 Sobic003G372900 Sobic003G372900 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic001G054100--Sobic010G002000 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic005G143500 Sobic005G143500 Sobic008G039600--Sobic005G143500 Sobic008G039600--Sobic001G083100 Sobic006G106400 Sobic006G106400 Sobic008G039600--Sobic006G106400 Sobic002G401800 Sobic002G401800 Sobic008G039600--Sobic002G401800 Sobic002G272100 Sobic002G272100 Sobic008G039600--Sobic002G272100 Sobic008G039600--Sobic010G002000 Sobic001G368500 Sobic001G368500 Sobic008G039600--Sobic001G368500 Sobic008G039600--Sobic003G094350 Sobic008G039600--Sobic002G181000 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic010G002000--Sobic003G094350 Sobic010G002000--Sobic008G039600 Sobic010G002000--Sobic001G054100 Sobic010G002000--Sobic001G500600 Sobic010G002000--Sobic002G401800 Sobic010G002000--Sobic009G148500 Sobic010G002000--Sobic005G143500 Sobic004G336200 Sobic004G336200 Sobic010G002000--Sobic004G336200 Sobic010G002000--Sobic003G141100 Sobic004G124400 Sobic004G124400 Sobic001G220000--Sobic004G124400 Sobic004G317700 Sobic004G317700 Sobic001G220000--Sobic004G317700 Sobic004G300100 Sobic004G300100 Sobic001G220000--Sobic004G300100 Sobic006G108200 Sobic006G108200 Sobic001G220000--Sobic006G108200 Sobic002G356900 Sobic002G356900 Sobic001G220000--Sobic002G356900 Sobic010G231500 Sobic010G231500 Sobic001G220000--Sobic010G231500 Sobic001G436400 Sobic001G436400 Sobic001G220000--Sobic001G436400 Sobic004G154800 Sobic004G154800 Sobic001G220000--Sobic004G154800 Sobic002G351600 Sobic002G351600 Sobic001G220000--Sobic002G351600 Sobic002G133900 Sobic002G133900 Sobic003G094350--Sobic002G133900 Sobic003G070900 Sobic003G070900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G287900 Sobic003G287900 Sobic003G094350--Sobic003G287900 Sobic005G100300 Sobic005G100300 Sobic003G094350--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic003G094350--Sobic002G028400 Sobic003G094350--Sobic004G336200 Sobic003G094350--Sobic010G002000 Sobic004G353100 Sobic004G353100 Sobic003G094350--Sobic004G353100 Sobic003G232700--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic003G232700--Sobic006G197300 Sobic003G232700--Sobic002G181000 Sobic003G232700--Sobic002G043600 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G301300 Sobic003G301300 Sobic003G232700--Sobic003G301300
Octagon: transcription factors


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