Gene annotation
Transcriptome id Sobic.009G127400.3,Sobic.009G127400.1,Sobic.009G127400.2
Synonym PAC, Sb09g019470
Functional annotation PAC, putative, expressed
UniProt A0A1Z5R3C8 , C5YXK2 , A0A1Z5R3J7
Pfam -
Panther DB PTHR37219
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G48120 : pale cress protein (PAC)
RAP-DB (Rice) LOC_Os05g32680.1 : PAC, putative, expressed
MaizeGDB (Corn) Zm00025a043605
Brachypodium KQK06456
Barley HORVU1Hr1G062740.8 , HORVU1Hr1G062740.9 , HORVU1Hr1G062740.4 , HORVU1Hr1G062740.5 , HORVU1Hr1G062740.6 , HORVU1Hr1G062740.7 , HORVU1Hr1G062740.2 , HORVU1Hr1G062740.3 , HORVU1Hr1G062740.14 , HORVU1Hr1G062740.12 , HORVU1Hr1G062740.13 , HORVU1Hr1G062740.10 , HORVU1Hr1G062740.11
Wheat TraesCS1D02G246100 , TraesCS1B02G257400 , TraesCS1A02G246800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G127400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
2 Sobic.007G069400 pentatricopeptide, putative, expressed -
3 Sobic.001G037500 expressed protein -
4 Sobic.007G076700 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
5 Sobic.003G149300 pentatricopeptide, putative, expressed -
6 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.005G197300 GTP-binding protein, putative, expressed K03977: engA, GTPase
8 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
9 Sobic.001G261573 - -
10 Sobic.003G161000 powdery mildew resistance protein PM3F, putative, expressed -
11 Sobic.004G020800 dimethyladenosine transferase, putative, expressed -
12 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
13 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
14 Sobic.001G491200 ABC transporter family protein, putative, expressed -
15 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
16 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
17 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
18 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.002G209600 CBS domain containing protein, expressed -
20 Sobic.003G161100 powdery mildew resistance protein PM3A, putative, expressed -


Gene co-expression network
sample Sobic009G127400 Sobic009G127400 Sobic003G040000 Sobic003G040000 Sobic009G127400--Sobic003G040000 Sobic007G069400 Sobic007G069400 Sobic009G127400--Sobic007G069400 Sobic001G037500 Sobic001G037500 Sobic009G127400--Sobic001G037500 Sobic007G076700 Sobic007G076700 Sobic009G127400--Sobic007G076700 Sobic003G149300 Sobic003G149300 Sobic009G127400--Sobic003G149300 Sobic002G114700 Sobic002G114700 Sobic009G127400--Sobic002G114700 Sobic005G197300 Sobic005G197300 Sobic009G127400--Sobic005G197300 Sobic003G327200 Sobic003G327200 Sobic009G127400--Sobic003G327200 Sobic001G261573 Sobic001G261573 Sobic009G127400--Sobic001G261573 Sobic006G058100 Sobic006G058100 Sobic003G040000--Sobic006G058100 Sobic002G293600 Sobic002G293600 Sobic003G040000--Sobic002G293600 Sobic003G040000--Sobic009G127400 Sobic003G162800 Sobic003G162800 Sobic003G040000--Sobic003G162800 Sobic003G040000--Sobic003G327200 Sobic003G434700 Sobic003G434700 Sobic003G040000--Sobic003G434700 Sobic003G040000--Sobic007G076700 Sobic003G040000--Sobic003G149300 Sobic001G022500 Sobic001G022500 Sobic003G040000--Sobic001G022500 Sobic003G039300 Sobic003G039300 Sobic007G069400--Sobic003G039300 Sobic007G069400--Sobic001G037500 Sobic006G110200 Sobic006G110200 Sobic007G069400--Sobic006G110200 Sobic006G273400 Sobic006G273400 Sobic007G069400--Sobic006G273400 Sobic007G069400--Sobic009G127400 Sobic007G069400--Sobic002G114700 Sobic007G069400--Sobic003G162800 Sobic001G054100 Sobic001G054100 Sobic007G069400--Sobic001G054100 Sobic001G537700 Sobic001G537700 Sobic007G069400--Sobic001G537700 Sobic002G042500 Sobic002G042500 Sobic001G037500--Sobic002G042500 Sobic001G037500--Sobic001G054100 Sobic001G037500--Sobic006G273400 Sobic003G150800 Sobic003G150800 Sobic001G037500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic001G037500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic001G037500--Sobic004G206200 Sobic002G081500 Sobic002G081500 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic002G296100 Sobic002G296100 Sobic001G037500--Sobic002G296100 Sobic004G035000 Sobic004G035000 Sobic007G076700--Sobic004G035000 Sobic001G031300 Sobic001G031300 Sobic007G076700--Sobic001G031300 Sobic002G209600 Sobic002G209600 Sobic007G076700--Sobic002G209600 Sobic007G076700--Sobic003G040000 Sobic007G076700--Sobic009G127400 Sobic004G142700 Sobic004G142700 Sobic007G076700--Sobic004G142700 Sobic003G112700 Sobic003G112700 Sobic007G076700--Sobic003G112700 Sobic007G076700--Sobic002G114700 Sobic001G354501 Sobic001G354501 Sobic007G076700--Sobic001G354501 Sobic003G149300--Sobic002G293600 Sobic003G149300--Sobic003G040000 Sobic003G149300--Sobic009G127400 Sobic003G161000 Sobic003G161000 Sobic003G149300--Sobic003G161000 Sobic001G514100 Sobic001G514100 Sobic003G149300--Sobic001G514100 Sobic003G155300 Sobic003G155300 Sobic003G149300--Sobic003G155300 Sobic003G149300--Sobic005G197300 Sobic003G149300--Sobic001G261573 Sobic009G129100 Sobic009G129100 Sobic003G149300--Sobic009G129100 Sobic008G078900 Sobic008G078900 Sobic002G114700--Sobic008G078900 Sobic003G114100 Sobic003G114100 Sobic002G114700--Sobic003G114100 Sobic002G114700--Sobic006G273400 Sobic001G076200 Sobic001G076200 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic002G114700--Sobic004G035000 Sobic007G205600 Sobic007G205600 Sobic002G114700--Sobic007G205600 Sobic005G022800 Sobic005G022800 Sobic005G197300--Sobic005G022800 Sobic005G197300--Sobic001G514100 Sobic001G099000 Sobic001G099000 Sobic005G197300--Sobic001G099000 Sobic004G255500 Sobic004G255500 Sobic005G197300--Sobic004G255500 Sobic005G197300--Sobic006G273400 Sobic004G263200 Sobic004G263200 Sobic005G197300--Sobic004G263200 Sobic005G197300--Sobic001G022500 Sobic005G197300--Sobic002G209600 Sobic004G225600 Sobic004G225600 Sobic005G197300--Sobic004G225600 Sobic003G327200--Sobic003G162800 Sobic001G375000 Sobic001G375000 Sobic003G327200--Sobic001G375000 Sobic001G003900 Sobic001G003900 Sobic003G327200--Sobic001G003900 Sobic003G327200--Sobic004G263200 Sobic003G128400 Sobic003G128400 Sobic003G327200--Sobic003G128400 Sobic003G327200--Sobic001G514100 Sobic007G116100 Sobic007G116100 Sobic003G327200--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic003G327200--Sobic010G027200 Sobic003G327200--Sobic001G022500 Sobic003G254000 Sobic003G254000 Sobic001G261573--Sobic003G254000 Sobic007G185700 Sobic007G185700 Sobic001G261573--Sobic007G185700 Sobic010G176550 Sobic010G176550 Sobic001G261573--Sobic010G176550 Sobic002G231200 Sobic002G231200 Sobic001G261573--Sobic002G231200 Sobic005G039500 Sobic005G039500 Sobic001G261573--Sobic005G039500 Sobic001G261573--Sobic006G058100 Sobic003G234900 Sobic003G234900 Sobic001G261573--Sobic003G234900 Sobic001G261573--Sobic003G161000 Sobic009G209300 Sobic009G209300 Sobic001G261573--Sobic009G209300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.