Gene annotation
Transcriptome id Sobic.002G114700.1
Synonym Sb02g009787, XK1, XK-1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5X4B7
Pfam PF00370
Panther DB PTHR10196 PTHR10196:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016773; phosphotransferase activity, alcohol group as acceptor GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT2G21370 : xylulose kinase-1
RAP-DB (Rice) LOC_Os07g22650.1 : expressed protein
MaizeGDB (Corn) Zm00025a013333
Brachypodium PNT76750
Barley -
Wheat TraesCS1B02G077300 , TraesCS1B02G077300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G078900 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
2 Sobic.003G114100 expressed protein -
3 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
4 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
5 Sobic.003G110700 nuclear transport factor, putative, expressed -
6 Sobic.007G069400 pentatricopeptide, putative, expressed -
7 Sobic.006G214400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
8 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
9 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
10 Sobic.009G085400 acyl-activating enzyme 14, putative, expressed -
11 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
12 Sobic.008G011200 STE_PAK_Ste20_STLK.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
13 Sobic.004G001300 -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15893: glycerate dehydrogenase
14 Sobic.009G127400 PAC, putative, expressed -
15 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
16 Sobic.007G076700 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
17 Sobic.001G037500 expressed protein -
18 Sobic.009G007800 TruB family pseudouridylate synthase, putative, expressed K03177: truB, PUS4, tRNA pseudouridine55 synthase
19 Sobic.010G005600 SEC14 cytosolic factor family protein, putative, expressed -
20 Sobic.001G031300 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G114700 Sobic002G114700 Sobic008G078900 Sobic008G078900 Sobic002G114700--Sobic008G078900 Sobic003G114100 Sobic003G114100 Sobic002G114700--Sobic003G114100 Sobic006G273400 Sobic006G273400 Sobic002G114700--Sobic006G273400 Sobic001G076200 Sobic001G076200 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic007G069400 Sobic007G069400 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic004G035000 Sobic004G035000 Sobic002G114700--Sobic004G035000 Sobic007G205600 Sobic007G205600 Sobic002G114700--Sobic007G205600 Sobic008G078900--Sobic006G273400 Sobic008G078900--Sobic002G114700 Sobic008G078900--Sobic003G114100 Sobic003G170200 Sobic003G170200 Sobic008G078900--Sobic003G170200 Sobic005G111500 Sobic005G111500 Sobic008G078900--Sobic005G111500 Sobic001G037500 Sobic001G037500 Sobic008G078900--Sobic001G037500 Sobic003G084500 Sobic003G084500 Sobic008G078900--Sobic003G084500 Sobic008G078900--Sobic007G205600 Sobic008G063200 Sobic008G063200 Sobic008G078900--Sobic008G063200 Sobic003G114100--Sobic002G114700 Sobic003G114100--Sobic001G076200 Sobic003G114100--Sobic008G078900 Sobic010G052500 Sobic010G052500 Sobic003G114100--Sobic010G052500 Sobic003G014000 Sobic003G014000 Sobic003G114100--Sobic003G014000 Sobic007G201400 Sobic007G201400 Sobic003G114100--Sobic007G201400 Sobic008G131700 Sobic008G131700 Sobic003G114100--Sobic008G131700 Sobic003G114100--Sobic006G273400 Sobic001G514100 Sobic001G514100 Sobic003G114100--Sobic001G514100 Sobic006G273400--Sobic001G037500 Sobic001G054100 Sobic001G054100 Sobic006G273400--Sobic001G054100 Sobic004G206200 Sobic004G206200 Sobic006G273400--Sobic004G206200 Sobic001G099000 Sobic001G099000 Sobic006G273400--Sobic001G099000 Sobic002G081500 Sobic002G081500 Sobic006G273400--Sobic002G081500 Sobic006G273400--Sobic003G084500 Sobic002G297400 Sobic002G297400 Sobic006G273400--Sobic002G297400 Sobic004G179200 Sobic004G179200 Sobic006G273400--Sobic004G179200 Sobic006G273400--Sobic008G078900 Sobic004G246800 Sobic004G246800 Sobic001G076200--Sobic004G246800 Sobic003G030400 Sobic003G030400 Sobic001G076200--Sobic003G030400 Sobic001G537700 Sobic001G537700 Sobic001G076200--Sobic001G537700 Sobic001G076200--Sobic003G114100 Sobic009G233800 Sobic009G233800 Sobic001G076200--Sobic009G233800 Sobic004G249500 Sobic004G249500 Sobic001G076200--Sobic004G249500 Sobic008G021700 Sobic008G021700 Sobic001G076200--Sobic008G021700 Sobic001G076200--Sobic002G114700 Sobic004G055600 Sobic004G055600 Sobic001G076200--Sobic004G055600 Sobic003G305000 Sobic003G305000 Sobic003G110700--Sobic003G305000 Sobic008G062500 Sobic008G062500 Sobic003G110700--Sobic008G062500 Sobic003G137100 Sobic003G137100 Sobic003G110700--Sobic003G137100 Sobic003G110700--Sobic002G114700 Sobic009G055800 Sobic009G055800 Sobic003G110700--Sobic009G055800 Sobic008G183200 Sobic008G183200 Sobic003G110700--Sobic008G183200 Sobic004G001300 Sobic004G001300 Sobic003G110700--Sobic004G001300 Sobic002G104000 Sobic002G104000 Sobic003G110700--Sobic002G104000 Sobic004G186200 Sobic004G186200 Sobic003G110700--Sobic004G186200 Sobic003G039300 Sobic003G039300 Sobic007G069400--Sobic003G039300 Sobic007G069400--Sobic001G037500 Sobic006G110200 Sobic006G110200 Sobic007G069400--Sobic006G110200 Sobic007G069400--Sobic006G273400 Sobic009G127400 Sobic009G127400 Sobic007G069400--Sobic009G127400 Sobic007G069400--Sobic002G114700 Sobic003G162800 Sobic003G162800 Sobic007G069400--Sobic003G162800 Sobic007G069400--Sobic001G054100 Sobic007G069400--Sobic001G537700 Sobic006G214400--Sobic002G114700 Sobic009G085400 Sobic009G085400 Sobic006G214400--Sobic009G085400 Sobic008G118000 Sobic008G118000 Sobic006G214400--Sobic008G118000 Sobic006G214400--Sobic001G076200 Sobic004G147200 Sobic004G147200 Sobic006G214400--Sobic004G147200 Sobic005G046500 Sobic005G046500 Sobic006G214400--Sobic005G046500 Sobic007G076700 Sobic007G076700 Sobic006G214400--Sobic007G076700 Sobic003G174800 Sobic003G174800 Sobic006G214400--Sobic003G174800 Sobic008G000900 Sobic008G000900 Sobic006G214400--Sobic008G000900 Sobic003G254000 Sobic003G254000 Sobic004G035000--Sobic003G254000 Sobic004G035000--Sobic007G076700 Sobic004G142700 Sobic004G142700 Sobic004G035000--Sobic004G142700 Sobic009G212700 Sobic009G212700 Sobic004G035000--Sobic009G212700 Sobic005G039500 Sobic005G039500 Sobic004G035000--Sobic005G039500 Sobic001G035900 Sobic001G035900 Sobic004G035000--Sobic001G035900 Sobic004G035000--Sobic002G114700 Sobic002G031400 Sobic002G031400 Sobic004G035000--Sobic002G031400 Sobic005G225800 Sobic005G225800 Sobic004G035000--Sobic005G225800 Sobic001G388400 Sobic001G388400 Sobic007G205600--Sobic001G388400 Sobic007G205600--Sobic003G170200 Sobic007G205600--Sobic001G537700 Sobic010G258300 Sobic010G258300 Sobic007G205600--Sobic010G258300 Sobic006G220600 Sobic006G220600 Sobic007G205600--Sobic006G220600 Sobic003G222600 Sobic003G222600 Sobic007G205600--Sobic003G222600 Sobic010G211500 Sobic010G211500 Sobic007G205600--Sobic010G211500 Sobic001G450600 Sobic001G450600 Sobic007G205600--Sobic001G450600 Sobic001G031300 Sobic001G031300 Sobic007G205600--Sobic001G031300
Octagon: transcription factors


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