Gene annotation
Transcriptome id Sobic.009G007800.1,Sobic.009G007800.2
Synonym Sb09g000890
Functional annotation TruB family pseudouridylate synthase, putative, expressed
UniProt A0A1Z5R0B2 , A0A1Z5R1C6
Pfam PF01509 PF16198 PF16198 PF01509
Panther DB PTHR13767 PTHR13767:SF2 PTHR13767:SF2 PTHR13767
NCBI CDD -
KEGG Orthology K03177; truB, PUS4, tRNA pseudouridine55 synthase
Gene Ontology GO:0001522; pseudouridine synthesis GO:0003723RNA binding GO:0009451RNA modification GO:0009982pseudouridine synthase activity GO:0006396RNA processing GO:0006396RNA processing GO:0009982pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT5G14460 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os05g01750.1 : TruB family pseudouridylate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a040964
Brachypodium KQK08068
Barley HORVU1Hr1G003530.6 , HORVU1Hr1G003530.4 , HORVU1Hr1G003530.5 , HORVU1Hr1G003530.2 , HORVU1Hr1G003530.3 , HORVU1Hr1G003530.1 , HORVU1Hr1G003530.8 , HORVU1Hr1G003530.7 , HORVU1Hr1G003530.14 , HORVU1Hr1G003530.10 , HORVU1Hr1G003530.11 , HORVU1Hr1G003530.12 , HORVU1Hr1G003530.13
Wheat TraesCS1A02G024700 , TraesCS1D02G024800 , TraesCS1B02G031100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
2 Sobic.002G336800 PPR repeat domain containing protein, putative, expressed -
3 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
4 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
6 Sobic.004G019500 pentatricopeptide, putative, expressed -
7 Sobic.009G085400 acyl-activating enzyme 14, putative, expressed -
8 Sobic.007G069400 pentatricopeptide, putative, expressed -
9 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
10 Sobic.010G176550 - -
11 Sobic.004G190900 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
12 Sobic.001G326300 PPR repeat domain containing protein, putative, expressed -
13 Sobic.003G144950 - -
14 Sobic.002G298100 expressed protein -
15 Sobic.003G162800 expressed protein -
16 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
17 Sobic.002G181132 - -
18 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
19 Sobic.009G103600 MEE12, putative, expressed -
20 Sobic.004G225600 - -


Gene co-expression network
sample Sobic009G007800 Sobic009G007800 Sobic001G022500 Sobic001G022500 Sobic009G007800--Sobic001G022500 Sobic002G336800 Sobic002G336800 Sobic009G007800--Sobic002G336800 Sobic003G434700 Sobic003G434700 Sobic009G007800--Sobic003G434700 Sobic002G114700 Sobic002G114700 Sobic009G007800--Sobic002G114700 Sobic003G040000 Sobic003G040000 Sobic009G007800--Sobic003G040000 Sobic004G019500 Sobic004G019500 Sobic009G007800--Sobic004G019500 Sobic009G085400 Sobic009G085400 Sobic009G007800--Sobic009G085400 Sobic007G069400 Sobic007G069400 Sobic009G007800--Sobic007G069400 Sobic004G035000 Sobic004G035000 Sobic009G007800--Sobic004G035000 Sobic001G022500--Sobic003G434700 Sobic004G225600 Sobic004G225600 Sobic001G022500--Sobic004G225600 Sobic004G003900 Sobic004G003900 Sobic001G022500--Sobic004G003900 Sobic003G162800 Sobic003G162800 Sobic001G022500--Sobic003G162800 Sobic001G003900 Sobic001G003900 Sobic001G022500--Sobic001G003900 Sobic003G067100 Sobic003G067100 Sobic001G022500--Sobic003G067100 Sobic001G375000 Sobic001G375000 Sobic001G022500--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic001G022500--Sobic001G099000 Sobic003G327200 Sobic003G327200 Sobic001G022500--Sobic003G327200 Sobic005G079025 Sobic005G079025 Sobic002G336800--Sobic005G079025 Sobic008G011100 Sobic008G011100 Sobic002G336800--Sobic008G011100 Sobic004G087600 Sobic004G087600 Sobic002G336800--Sobic004G087600 Sobic003G144950 Sobic003G144950 Sobic002G336800--Sobic003G144950 Sobic006G078600 Sobic006G078600 Sobic002G336800--Sobic006G078600 Sobic009G005100 Sobic009G005100 Sobic002G336800--Sobic009G005100 Sobic002G336800--Sobic009G007800 Sobic001G360900 Sobic001G360900 Sobic002G336800--Sobic001G360900 Sobic009G103600 Sobic009G103600 Sobic002G336800--Sobic009G103600 Sobic003G434700--Sobic001G022500 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic003G434700--Sobic004G225600 Sobic003G434700--Sobic001G375000 Sobic003G234900 Sobic003G234900 Sobic003G434700--Sobic003G234900 Sobic008G078900 Sobic008G078900 Sobic002G114700--Sobic008G078900 Sobic003G114100 Sobic003G114100 Sobic002G114700--Sobic003G114100 Sobic006G273400 Sobic006G273400 Sobic002G114700--Sobic006G273400 Sobic001G076200 Sobic001G076200 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic002G114700--Sobic004G035000 Sobic007G205600 Sobic007G205600 Sobic002G114700--Sobic007G205600 Sobic006G058100 Sobic006G058100 Sobic003G040000--Sobic006G058100 Sobic002G293600 Sobic002G293600 Sobic003G040000--Sobic002G293600 Sobic009G127400 Sobic009G127400 Sobic003G040000--Sobic009G127400 Sobic003G040000--Sobic003G162800 Sobic003G040000--Sobic003G327200 Sobic003G040000--Sobic003G434700 Sobic007G076700 Sobic007G076700 Sobic003G040000--Sobic007G076700 Sobic003G149300 Sobic003G149300 Sobic003G040000--Sobic003G149300 Sobic003G040000--Sobic001G022500 Sobic004G144400 Sobic004G144400 Sobic004G019500--Sobic004G144400 Sobic001G540800 Sobic001G540800 Sobic004G019500--Sobic001G540800 Sobic009G214200 Sobic009G214200 Sobic004G019500--Sobic009G214200 Sobic001G326300 Sobic001G326300 Sobic004G019500--Sobic001G326300 Sobic007G210000 Sobic007G210000 Sobic004G019500--Sobic007G210000 Sobic004G019500--Sobic001G022500 Sobic004G019500--Sobic004G225600 Sobic004G019500--Sobic003G434700 Sobic004G019500--Sobic004G003900 Sobic003G416100 Sobic003G416100 Sobic009G085400--Sobic003G416100 Sobic010G248600 Sobic010G248600 Sobic009G085400--Sobic010G248600 Sobic009G085400--Sobic006G214400 Sobic009G085400--Sobic002G114700 Sobic003G106200 Sobic003G106200 Sobic009G085400--Sobic003G106200 Sobic005G046500 Sobic005G046500 Sobic009G085400--Sobic005G046500 Sobic009G085400--Sobic004G035000 Sobic007G002000 Sobic007G002000 Sobic009G085400--Sobic007G002000 Sobic005G173366 Sobic005G173366 Sobic009G085400--Sobic005G173366 Sobic003G039300 Sobic003G039300 Sobic007G069400--Sobic003G039300 Sobic001G037500 Sobic001G037500 Sobic007G069400--Sobic001G037500 Sobic006G110200 Sobic006G110200 Sobic007G069400--Sobic006G110200 Sobic007G069400--Sobic006G273400 Sobic007G069400--Sobic009G127400 Sobic007G069400--Sobic002G114700 Sobic007G069400--Sobic003G162800 Sobic001G054100 Sobic001G054100 Sobic007G069400--Sobic001G054100 Sobic001G537700 Sobic001G537700 Sobic007G069400--Sobic001G537700 Sobic003G254000 Sobic003G254000 Sobic004G035000--Sobic003G254000 Sobic004G035000--Sobic007G076700 Sobic004G142700 Sobic004G142700 Sobic004G035000--Sobic004G142700 Sobic009G212700 Sobic009G212700 Sobic004G035000--Sobic009G212700 Sobic005G039500 Sobic005G039500 Sobic004G035000--Sobic005G039500 Sobic001G035900 Sobic001G035900 Sobic004G035000--Sobic001G035900 Sobic004G035000--Sobic002G114700 Sobic002G031400 Sobic002G031400 Sobic004G035000--Sobic002G031400 Sobic005G225800 Sobic005G225800 Sobic004G035000--Sobic005G225800
Octagon: transcription factors


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