Gene annotation
Transcriptome id Sobic.002G191100.1
Synonym Sb02g023840
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
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UniProt A0A1B6QCA9
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF210
NCBI CDD KOG0330; ATP-dependent RNA helicase KOG0331ATP-dependent RNA helicase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G59990 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os09g21520.2 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a046847
Brachypodium KQJ90116
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
2 Sobic.002G181132 - -
3 Sobic.003G162800 expressed protein -
4 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
5 Sobic.003G039300 expressed protein -
6 Sobic.003G345900 histone deacetylase, putative, expressed -
7 Sobic.007G137800 pentatricopeptide, putative, expressed -
8 Sobic.009G214200 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase
9 Sobic.004G070200 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metallo-beta-lactamase, putative, expressed -
10 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
11 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
12 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
13 Sobic.003G324100 haloacid dehalogenase, putative, expressed K01094: phosphatidylglycerophosphatase GEP4
14 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
15 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
16 Sobic.002G298100 expressed protein -
17 Sobic.002G092050 - -
18 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
19 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G019500 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G191100 Sobic002G191100 Sobic001G114400 Sobic001G114400 Sobic002G191100--Sobic001G114400 Sobic002G181132 Sobic002G181132 Sobic002G191100--Sobic002G181132 Sobic003G162800 Sobic003G162800 Sobic002G191100--Sobic003G162800 Sobic008G038600 Sobic008G038600 Sobic002G191100--Sobic008G038600 Sobic003G039300 Sobic003G039300 Sobic002G191100--Sobic003G039300 Sobic003G345900 Sobic003G345900 Sobic002G191100--Sobic003G345900 Sobic007G137800 Sobic007G137800 Sobic002G191100--Sobic007G137800 Sobic009G214200 Sobic009G214200 Sobic002G191100--Sobic009G214200 Sobic004G070200 Sobic004G070200 Sobic002G191100--Sobic004G070200 Sobic003G222600 Sobic003G222600 Sobic001G114400--Sobic003G222600 Sobic001G114400--Sobic002G191100 Sobic003G030400 Sobic003G030400 Sobic001G114400--Sobic003G030400 Sobic009G036300 Sobic009G036300 Sobic001G114400--Sobic009G036300 Sobic001G114400--Sobic004G070200 Sobic008G148400 Sobic008G148400 Sobic001G114400--Sobic008G148400 Sobic010G039200 Sobic010G039200 Sobic001G114400--Sobic010G039200 Sobic003G324100 Sobic003G324100 Sobic001G114400--Sobic003G324100 Sobic010G211500 Sobic010G211500 Sobic001G114400--Sobic010G211500 Sobic006G166500 Sobic006G166500 Sobic002G181132--Sobic006G166500 Sobic003G045300 Sobic003G045300 Sobic002G181132--Sobic003G045300 Sobic004G003900 Sobic004G003900 Sobic002G181132--Sobic004G003900 Sobic001G375000 Sobic001G375000 Sobic002G181132--Sobic001G375000 Sobic002G181132--Sobic003G162800 Sobic008G090900 Sobic008G090900 Sobic002G181132--Sobic008G090900 Sobic009G092900 Sobic009G092900 Sobic002G181132--Sobic009G092900 Sobic002G181132--Sobic003G345900 Sobic002G156100 Sobic002G156100 Sobic002G181132--Sobic002G156100 Sobic003G162800--Sobic001G375000 Sobic003G327200 Sobic003G327200 Sobic003G162800--Sobic003G327200 Sobic003G162800--Sobic002G156100 Sobic003G162800--Sobic003G345900 Sobic003G162800--Sobic002G181132 Sobic003G162800--Sobic004G003900 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic010G027200 Sobic010G027200 Sobic003G162800--Sobic010G027200 Sobic002G317100 Sobic002G317100 Sobic008G038600--Sobic002G317100 Sobic006G128400 Sobic006G128400 Sobic008G038600--Sobic006G128400 Sobic008G038600--Sobic002G191100 Sobic007G132200 Sobic007G132200 Sobic008G038600--Sobic007G132200 Sobic001G153300 Sobic001G153300 Sobic008G038600--Sobic001G153300 Sobic006G193300 Sobic006G193300 Sobic008G038600--Sobic006G193300 Sobic008G038600--Sobic004G003900 Sobic002G092050 Sobic002G092050 Sobic008G038600--Sobic002G092050 Sobic003G399100 Sobic003G399100 Sobic008G038600--Sobic003G399100 Sobic006G110200 Sobic006G110200 Sobic003G039300--Sobic006G110200 Sobic003G084500 Sobic003G084500 Sobic003G039300--Sobic003G084500 Sobic007G069400 Sobic007G069400 Sobic003G039300--Sobic007G069400 Sobic001G161400 Sobic001G161400 Sobic003G039300--Sobic001G161400 Sobic001G537700 Sobic001G537700 Sobic003G039300--Sobic001G537700 Sobic009G137000 Sobic009G137000 Sobic003G039300--Sobic009G137000 Sobic003G039300--Sobic010G211500 Sobic006G237100 Sobic006G237100 Sobic003G039300--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic003G039300--Sobic007G015300 Sobic003G345900--Sobic003G162800 Sobic003G345900--Sobic004G003900 Sobic003G345900--Sobic002G181132 Sobic003G345900--Sobic001G375000 Sobic006G088000 Sobic006G088000 Sobic003G345900--Sobic006G088000 Sobic003G345900--Sobic002G156100 Sobic003G345900--Sobic010G027200 Sobic006G217000 Sobic006G217000 Sobic003G345900--Sobic006G217000 Sobic004G263200 Sobic004G263200 Sobic003G345900--Sobic004G263200 Sobic007G137800--Sobic002G191100 Sobic007G137800--Sobic003G039300 Sobic007G137800--Sobic006G110200 Sobic010G051700 Sobic010G051700 Sobic007G137800--Sobic010G051700 Sobic004G190900 Sobic004G190900 Sobic007G137800--Sobic004G190900 Sobic003G434700 Sobic003G434700 Sobic007G137800--Sobic003G434700 Sobic007G137800--Sobic003G162800 Sobic007G137800--Sobic003G345900 Sobic002G140000 Sobic002G140000 Sobic007G137800--Sobic002G140000 Sobic009G214200--Sobic001G375000 Sobic004G019500 Sobic004G019500 Sobic009G214200--Sobic004G019500 Sobic001G448600 Sobic001G448600 Sobic009G214200--Sobic001G448600 Sobic009G214200--Sobic004G003900 Sobic009G214200--Sobic002G140000 Sobic009G103600 Sobic009G103600 Sobic009G214200--Sobic009G103600 Sobic009G214200--Sobic006G088000 Sobic003G128400 Sobic003G128400 Sobic009G214200--Sobic003G128400 Sobic001G249400 Sobic001G249400 Sobic009G214200--Sobic001G249400 Sobic004G070200--Sobic003G222600 Sobic004G070200--Sobic003G030400 Sobic007G131200 Sobic007G131200 Sobic004G070200--Sobic007G131200 Sobic002G172600 Sobic002G172600 Sobic004G070200--Sobic002G172600 Sobic004G070200--Sobic006G110200 Sobic004G070200--Sobic009G137000 Sobic004G070200--Sobic001G114400 Sobic004G070200--Sobic002G191100 Sobic001G246200 Sobic001G246200 Sobic004G070200--Sobic001G246200
Octagon: transcription factors


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