Gene annotation
Transcriptome id Sobic.007G137800.7,Sobic.007G137800.8,Sobic.007G137800.5,Sobic.007G137800.6,Sobic.007G137800.3,Sobic.007G137800.4
Synonym Sb07g021340
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YL91
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47530 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os08g33700.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a005918
Brachypodium KQJ98476 , PNT68201
Barley HORVU4Hr1G009150.4 , HORVU4Hr1G009150.3 , HORVU4Hr1G009150.2 , HORVU4Hr1G009150.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
2 Sobic.003G039300 expressed protein -
3 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
4 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
5 Sobic.004G190900 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
6 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
7 Sobic.003G162800 expressed protein -
8 Sobic.003G345900 histone deacetylase, putative, expressed -
9 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
10 Sobic.007G225000 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
11 Sobic.002G181132 - -
12 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
13 Sobic.003G045300 cobalt ion transporter, putative, expressed -
14 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
15 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
16 Sobic.004G019500 pentatricopeptide, putative, expressed -
17 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
18 Sobic.009G245600 pentatricopeptide, putative, expressed -
19 Sobic.001G003900 pentatricopeptide, putative, expressed -
20 Sobic.009G214200 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase


Gene co-expression network
sample Sobic007G137800 Sobic007G137800 Sobic002G191100 Sobic002G191100 Sobic007G137800--Sobic002G191100 Sobic003G039300 Sobic003G039300 Sobic007G137800--Sobic003G039300 Sobic006G110200 Sobic006G110200 Sobic007G137800--Sobic006G110200 Sobic010G051700 Sobic010G051700 Sobic007G137800--Sobic010G051700 Sobic004G190900 Sobic004G190900 Sobic007G137800--Sobic004G190900 Sobic003G434700 Sobic003G434700 Sobic007G137800--Sobic003G434700 Sobic003G162800 Sobic003G162800 Sobic007G137800--Sobic003G162800 Sobic003G345900 Sobic003G345900 Sobic007G137800--Sobic003G345900 Sobic002G140000 Sobic002G140000 Sobic007G137800--Sobic002G140000 Sobic001G114400 Sobic001G114400 Sobic002G191100--Sobic001G114400 Sobic002G181132 Sobic002G181132 Sobic002G191100--Sobic002G181132 Sobic002G191100--Sobic003G162800 Sobic008G038600 Sobic008G038600 Sobic002G191100--Sobic008G038600 Sobic002G191100--Sobic003G039300 Sobic002G191100--Sobic003G345900 Sobic002G191100--Sobic007G137800 Sobic009G214200 Sobic009G214200 Sobic002G191100--Sobic009G214200 Sobic004G070200 Sobic004G070200 Sobic002G191100--Sobic004G070200 Sobic003G039300--Sobic006G110200 Sobic003G084500 Sobic003G084500 Sobic003G039300--Sobic003G084500 Sobic007G069400 Sobic007G069400 Sobic003G039300--Sobic007G069400 Sobic001G161400 Sobic001G161400 Sobic003G039300--Sobic001G161400 Sobic001G537700 Sobic001G537700 Sobic003G039300--Sobic001G537700 Sobic009G137000 Sobic009G137000 Sobic003G039300--Sobic009G137000 Sobic010G211500 Sobic010G211500 Sobic003G039300--Sobic010G211500 Sobic006G237100 Sobic006G237100 Sobic003G039300--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic003G039300--Sobic007G015300 Sobic006G110200--Sobic003G039300 Sobic006G110200--Sobic007G069400 Sobic006G110200--Sobic002G140000 Sobic006G110200--Sobic001G537700 Sobic006G110200--Sobic009G137000 Sobic006G110200--Sobic007G015300 Sobic002G045700 Sobic002G045700 Sobic006G110200--Sobic002G045700 Sobic010G027200 Sobic010G027200 Sobic006G110200--Sobic010G027200 Sobic001G228300 Sobic001G228300 Sobic006G110200--Sobic001G228300 Sobic003G033100 Sobic003G033100 Sobic010G051700--Sobic003G033100 Sobic004G025800 Sobic004G025800 Sobic010G051700--Sobic004G025800 Sobic006G128400 Sobic006G128400 Sobic010G051700--Sobic006G128400 Sobic010G051700--Sobic003G434700 Sobic010G115400 Sobic010G115400 Sobic010G051700--Sobic010G115400 Sobic001G172700 Sobic001G172700 Sobic010G051700--Sobic001G172700 Sobic003G032700 Sobic003G032700 Sobic010G051700--Sobic003G032700 Sobic003G171500 Sobic003G171500 Sobic010G051700--Sobic003G171500 Sobic004G019200 Sobic004G019200 Sobic010G051700--Sobic004G019200 Sobic004G190900--Sobic003G434700 Sobic004G190900--Sobic003G162800 Sobic004G206200 Sobic004G206200 Sobic004G190900--Sobic004G206200 Sobic004G190900--Sobic007G069400 Sobic004G225600 Sobic004G225600 Sobic004G190900--Sobic004G225600 Sobic001G022500 Sobic001G022500 Sobic004G190900--Sobic001G022500 Sobic004G190900--Sobic006G110200 Sobic003G254000 Sobic003G254000 Sobic004G190900--Sobic003G254000 Sobic004G035000 Sobic004G035000 Sobic004G190900--Sobic004G035000 Sobic003G434700--Sobic001G022500 Sobic003G067100 Sobic003G067100 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic003G434700--Sobic004G225600 Sobic001G375000 Sobic001G375000 Sobic003G434700--Sobic001G375000 Sobic003G234900 Sobic003G234900 Sobic003G434700--Sobic003G234900 Sobic003G162800--Sobic001G375000 Sobic003G327200 Sobic003G327200 Sobic003G162800--Sobic003G327200 Sobic002G156100 Sobic002G156100 Sobic003G162800--Sobic002G156100 Sobic003G162800--Sobic003G345900 Sobic003G162800--Sobic002G181132 Sobic004G003900 Sobic004G003900 Sobic003G162800--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic003G162800--Sobic010G027200 Sobic003G345900--Sobic003G162800 Sobic003G345900--Sobic004G003900 Sobic003G345900--Sobic002G181132 Sobic003G345900--Sobic001G375000 Sobic006G088000 Sobic006G088000 Sobic003G345900--Sobic006G088000 Sobic003G345900--Sobic002G156100 Sobic003G345900--Sobic010G027200 Sobic006G217000 Sobic006G217000 Sobic003G345900--Sobic006G217000 Sobic004G263200 Sobic004G263200 Sobic003G345900--Sobic004G263200 Sobic002G140000--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400
Octagon: transcription factors


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