Gene annotation
Transcriptome id Sobic.009G245600.1
Synonym Sb09g029650
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6PAH1
Pfam PF13812 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF681
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47840 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g50460.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a036698
Brachypodium KQK04677 , KQK04679
Barley HORVU6Hr1G034450.1 , HORVU6Hr1G034450.2 , HORVU6Hr1G034450.3 , HORVU6Hr1G034450.4 , HORVU6Hr1G034450.5 , HORVU6Hr1G034450.6 , HORVU6Hr1G034450.7 , HORVU6Hr1G034450.8 , HORVU6Hr1G034450.9 , HORVU6Hr1G034450.10
Wheat TraesCS6A02G168700 , TraesCS6D02G158220
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G121200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
2 Sobic.007G137800 pentatricopeptide, putative, expressed -
3 Sobic.004G027500 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
4 Sobic.005G012700 expressed protein -
5 Sobic.003G014700 pentatricopeptide, putative, expressed -
6 Sobic.002G373950 - -
7 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
8 Sobic.005G160100 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
9 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
10 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G171600 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
12 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
13 Sobic.007G225000 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
14 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
15 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
16 Sobic.006G083300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K18995: ATP-dependent RNA helicase DHX29
17 Sobic.005G079025 - -
18 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
19 Sobic.002G092050 - -
20 Sobic.010G115400 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic009G245600 Sobic009G245600 Sobic003G121200 Sobic003G121200 Sobic009G245600--Sobic003G121200 Sobic007G137800 Sobic007G137800 Sobic009G245600--Sobic007G137800 Sobic004G027500 Sobic004G027500 Sobic009G245600--Sobic004G027500 Sobic005G012700 Sobic005G012700 Sobic009G245600--Sobic005G012700 Sobic003G014700 Sobic003G014700 Sobic009G245600--Sobic003G014700 Sobic002G373950 Sobic002G373950 Sobic009G245600--Sobic002G373950 Sobic001G352900 Sobic001G352900 Sobic009G245600--Sobic001G352900 Sobic005G160100 Sobic005G160100 Sobic009G245600--Sobic005G160100 Sobic002G378100 Sobic002G378100 Sobic009G245600--Sobic002G378100 Sobic003G121200--Sobic004G027500 Sobic003G121200--Sobic003G014700 Sobic003G121200--Sobic009G245600 Sobic003G121200--Sobic002G378100 Sobic010G115400 Sobic010G115400 Sobic003G121200--Sobic010G115400 Sobic001G171600 Sobic001G171600 Sobic003G121200--Sobic001G171600 Sobic005G000300 Sobic005G000300 Sobic003G121200--Sobic005G000300 Sobic006G185200 Sobic006G185200 Sobic003G121200--Sobic006G185200 Sobic003G445500 Sobic003G445500 Sobic003G121200--Sobic003G445500 Sobic002G191100 Sobic002G191100 Sobic007G137800--Sobic002G191100 Sobic003G039300 Sobic003G039300 Sobic007G137800--Sobic003G039300 Sobic006G110200 Sobic006G110200 Sobic007G137800--Sobic006G110200 Sobic010G051700 Sobic010G051700 Sobic007G137800--Sobic010G051700 Sobic004G190900 Sobic004G190900 Sobic007G137800--Sobic004G190900 Sobic003G434700 Sobic003G434700 Sobic007G137800--Sobic003G434700 Sobic003G162800 Sobic003G162800 Sobic007G137800--Sobic003G162800 Sobic003G345900 Sobic003G345900 Sobic007G137800--Sobic003G345900 Sobic002G140000 Sobic002G140000 Sobic007G137800--Sobic002G140000 Sobic007G106700 Sobic007G106700 Sobic004G027500--Sobic007G106700 Sobic003G275600 Sobic003G275600 Sobic004G027500--Sobic003G275600 Sobic010G017900 Sobic010G017900 Sobic004G027500--Sobic010G017900 Sobic004G027500--Sobic002G378100 Sobic002G071400 Sobic002G071400 Sobic004G027500--Sobic002G071400 Sobic004G027500--Sobic003G014700 Sobic010G206300 Sobic010G206300 Sobic004G027500--Sobic010G206300 Sobic001G501400 Sobic001G501400 Sobic004G027500--Sobic001G501400 Sobic003G123200 Sobic003G123200 Sobic004G027500--Sobic003G123200 Sobic002G234700 Sobic002G234700 Sobic005G012700--Sobic002G234700 Sobic005G012700--Sobic002G373950 Sobic005G012700--Sobic003G014700 Sobic009G213200 Sobic009G213200 Sobic005G012700--Sobic009G213200 Sobic001G224200 Sobic001G224200 Sobic005G012700--Sobic001G224200 Sobic009G103600 Sobic009G103600 Sobic005G012700--Sobic009G103600 Sobic008G165900 Sobic008G165900 Sobic005G012700--Sobic008G165900 Sobic009G214200 Sobic009G214200 Sobic005G012700--Sobic009G214200 Sobic006G128400 Sobic006G128400 Sobic005G012700--Sobic006G128400 Sobic003G014700--Sobic002G378100 Sobic005G028300 Sobic005G028300 Sobic003G014700--Sobic005G028300 Sobic010G083900 Sobic010G083900 Sobic003G014700--Sobic010G083900 Sobic001G322600 Sobic001G322600 Sobic003G014700--Sobic001G322600 Sobic001G391101 Sobic001G391101 Sobic003G014700--Sobic001G391101 Sobic003G014700--Sobic004G027500 Sobic002G423400 Sobic002G423400 Sobic003G014700--Sobic002G423400 Sobic003G014700--Sobic005G012700 Sobic003G419800 Sobic003G419800 Sobic003G014700--Sobic003G419800 Sobic006G086600 Sobic006G086600 Sobic002G373950--Sobic006G086600 Sobic010G003400 Sobic010G003400 Sobic002G373950--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic002G373950--Sobic001G453400 Sobic002G373950--Sobic009G213200 Sobic010G174700 Sobic010G174700 Sobic002G373950--Sobic010G174700 Sobic003G260400 Sobic003G260400 Sobic002G373950--Sobic003G260400 Sobic002G373950--Sobic010G115400 Sobic001G089600 Sobic001G089600 Sobic002G373950--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic002G373950--Sobic010G102600 Sobic010G053600 Sobic010G053600 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic004G242400 Sobic004G242400 Sobic001G352900--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic001G352900--Sobic010G001100 Sobic009G109200 Sobic009G109200 Sobic001G352900--Sobic009G109200 Sobic002G317200 Sobic002G317200 Sobic001G352900--Sobic002G317200 Sobic002G397500 Sobic002G397500 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic003G293200 Sobic003G293200 Sobic001G352900--Sobic003G293200 Sobic002G275600 Sobic002G275600 Sobic005G160100--Sobic002G275600 Sobic001G214600 Sobic001G214600 Sobic005G160100--Sobic001G214600 Sobic005G160100--Sobic001G089600 Sobic004G260100 Sobic004G260100 Sobic005G160100--Sobic004G260100 Sobic003G171500 Sobic003G171500 Sobic005G160100--Sobic003G171500 Sobic004G096400 Sobic004G096400 Sobic005G160100--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic005G160100--Sobic010G059500 Sobic009G251200 Sobic009G251200 Sobic005G160100--Sobic009G251200 Sobic005G160100--Sobic003G260400 Sobic002G378100--Sobic006G185200 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic002G378100--Sobic009G213200
Octagon: transcription factors


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