Gene annotation
Transcriptome id Sobic.003G121200.1
Synonym Sb03g010260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PPR repeat containing protein, expressed
UniProt C5XGH4
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF348
NCBI CDD -
KEGG Orthology K17964; leucine-rich PPR motif-containing protein, mitochondrial
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57250 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g15840.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a024037
Brachypodium KQK03767
Barley HORVU3Hr1G036870.11 , HORVU3Hr1G036870.10 , HORVU3Hr1G036870.13 , HORVU3Hr1G036870.12 , HORVU3Hr1G036870.14 , HORVU3Hr1G036870.5 , HORVU3Hr1G036870.4 , HORVU3Hr1G036870.6 , HORVU3Hr1G036870.1 , HORVU3Hr1G036870.3 , HORVU3Hr1G036870.2 , HORVU3Hr1G036870.9
Wheat TraesCS3B02G210100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G027500 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
2 Sobic.003G014700 pentatricopeptide, putative, expressed -
3 Sobic.009G245600 pentatricopeptide, putative, expressed -
4 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
5 Sobic.010G115400 pentatricopeptide, putative, expressed -
6 Sobic.001G171600 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
7 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
8 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
9 Sobic.003G445500 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
10 Sobic.004G351800 PPR repeat containing protein, expressed -
11 Sobic.001G539016 - -
12 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
13 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
14 Sobic.006G128400 PPR repeat containing protein, expressed -
15 Sobic.009G173600 expressed protein K14572: MDN1, midasin
16 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
17 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
18 Sobic.006G013100 expressed protein K13205: AAR2, A1 cistron-splicing factor AAR2
19 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
20 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -


Gene co-expression network
sample Sobic003G121200 Sobic003G121200 Sobic004G027500 Sobic004G027500 Sobic003G121200--Sobic004G027500 Sobic003G014700 Sobic003G014700 Sobic003G121200--Sobic003G014700 Sobic009G245600 Sobic009G245600 Sobic003G121200--Sobic009G245600 Sobic002G378100 Sobic002G378100 Sobic003G121200--Sobic002G378100 Sobic010G115400 Sobic010G115400 Sobic003G121200--Sobic010G115400 Sobic001G171600 Sobic001G171600 Sobic003G121200--Sobic001G171600 Sobic005G000300 Sobic005G000300 Sobic003G121200--Sobic005G000300 Sobic006G185200 Sobic006G185200 Sobic003G121200--Sobic006G185200 Sobic003G445500 Sobic003G445500 Sobic003G121200--Sobic003G445500 Sobic007G106700 Sobic007G106700 Sobic004G027500--Sobic007G106700 Sobic003G275600 Sobic003G275600 Sobic004G027500--Sobic003G275600 Sobic010G017900 Sobic010G017900 Sobic004G027500--Sobic010G017900 Sobic004G027500--Sobic002G378100 Sobic002G071400 Sobic002G071400 Sobic004G027500--Sobic002G071400 Sobic004G027500--Sobic003G014700 Sobic010G206300 Sobic010G206300 Sobic004G027500--Sobic010G206300 Sobic001G501400 Sobic001G501400 Sobic004G027500--Sobic001G501400 Sobic003G123200 Sobic003G123200 Sobic004G027500--Sobic003G123200 Sobic003G014700--Sobic002G378100 Sobic005G028300 Sobic005G028300 Sobic003G014700--Sobic005G028300 Sobic010G083900 Sobic010G083900 Sobic003G014700--Sobic010G083900 Sobic001G322600 Sobic001G322600 Sobic003G014700--Sobic001G322600 Sobic001G391101 Sobic001G391101 Sobic003G014700--Sobic001G391101 Sobic003G014700--Sobic004G027500 Sobic002G423400 Sobic002G423400 Sobic003G014700--Sobic002G423400 Sobic005G012700 Sobic005G012700 Sobic003G014700--Sobic005G012700 Sobic003G419800 Sobic003G419800 Sobic003G014700--Sobic003G419800 Sobic009G245600--Sobic003G121200 Sobic007G137800 Sobic007G137800 Sobic009G245600--Sobic007G137800 Sobic009G245600--Sobic004G027500 Sobic009G245600--Sobic005G012700 Sobic009G245600--Sobic003G014700 Sobic002G373950 Sobic002G373950 Sobic009G245600--Sobic002G373950 Sobic001G352900 Sobic001G352900 Sobic009G245600--Sobic001G352900 Sobic005G160100 Sobic005G160100 Sobic009G245600--Sobic005G160100 Sobic009G245600--Sobic002G378100 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic001G089600 Sobic001G089600 Sobic010G115400--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic010G115400--Sobic002G399800 Sobic010G102600 Sobic010G102600 Sobic010G115400--Sobic010G102600 Sobic010G174700 Sobic010G174700 Sobic010G115400--Sobic010G174700 Sobic001G393900 Sobic001G393900 Sobic010G115400--Sobic001G393900 Sobic003G095900 Sobic003G095900 Sobic010G115400--Sobic003G095900 Sobic004G019200 Sobic004G019200 Sobic010G115400--Sobic004G019200 Sobic003G260400 Sobic003G260400 Sobic010G115400--Sobic003G260400 Sobic003G032700 Sobic003G032700 Sobic010G115400--Sobic003G032700 Sobic006G086600 Sobic006G086600 Sobic001G171600--Sobic006G086600 Sobic007G220300 Sobic007G220300 Sobic001G171600--Sobic007G220300 Sobic003G171500 Sobic003G171500 Sobic001G171600--Sobic003G171500 Sobic001G214600 Sobic001G214600 Sobic001G171600--Sobic001G214600 Sobic005G137700 Sobic005G137700 Sobic001G171600--Sobic005G137700 Sobic009G204400 Sobic009G204400 Sobic001G171600--Sobic009G204400 Sobic001G171600--Sobic001G089600 Sobic001G334700 Sobic001G334700 Sobic001G171600--Sobic001G334700 Sobic001G171600--Sobic002G373950 Sobic002G112600 Sobic002G112600 Sobic005G000300--Sobic002G112600 Sobic004G031300 Sobic004G031300 Sobic005G000300--Sobic004G031300 Sobic010G091500 Sobic010G091500 Sobic005G000300--Sobic010G091500 Sobic005G000300--Sobic003G123200 Sobic005G000300--Sobic010G224700 Sobic001G334100 Sobic001G334100 Sobic005G000300--Sobic001G334100 Sobic009G246500 Sobic009G246500 Sobic005G000300--Sobic009G246500 Sobic005G000300--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic005G000300--Sobic008G163500 Sobic006G185200--Sobic002G378100 Sobic004G085000 Sobic004G085000 Sobic006G185200--Sobic004G085000 Sobic008G017100 Sobic008G017100 Sobic006G185200--Sobic008G017100 Sobic006G185200--Sobic001G214600 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic001G145400 Sobic001G145400 Sobic006G185200--Sobic001G145400 Sobic001G111600 Sobic001G111600 Sobic003G445500--Sobic001G111600 Sobic003G445500--Sobic001G352900 Sobic009G109200 Sobic009G109200 Sobic003G445500--Sobic009G109200 Sobic005G128400 Sobic005G128400 Sobic003G445500--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic003G445500--Sobic003G293200 Sobic005G191900 Sobic005G191900 Sobic003G445500--Sobic005G191900 Sobic002G397500 Sobic002G397500 Sobic003G445500--Sobic002G397500 Sobic003G294600 Sobic003G294600 Sobic003G445500--Sobic003G294600 Sobic010G053600 Sobic010G053600 Sobic003G445500--Sobic010G053600
Octagon: transcription factors


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