Gene annotation
Transcriptome id Sobic.006G013100.1,Sobic.006G013100.2
Synonym Sb06g001290
Functional annotation expressed protein
UniProt C5YC36
Pfam PF05282
Panther DB PTHR12689
NCBI CDD KOG3937; mRNA splicing factor
KEGG Orthology K13205; AAR2, A1 cistron-splicing factor AAR2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G66510 : AAR2 protein family
RAP-DB (Rice) LOC_Os04g04320.1 : expressed protein
MaizeGDB (Corn) Zm00025a012272
Brachypodium KQJ81519 , PNT60535 , KQJ81520 , KQJ81518
Barley HORVU4Hr1G033850.2 , HORVU4Hr1G033850.1 , HORVU2Hr1G095690.1 , HORVU2Hr1G002050.11 , HORVU2Hr1G002050.10 , HORVU2Hr1G002050.9 , HORVU2Hr1G002050.3 , HORVU2Hr1G002050.2 , HORVU2Hr1G002050.5 , HORVU2Hr1G002050.4 , HORVU2Hr1G002050.7 , HORVU2Hr1G002050.6 , HORVU6Hr1G058720.1 , HORVU2Hr1G117640.1 , HORVU2Hr1G002050.1
Wheat TraesCS2A02G012800 , TraesCS2B02G005100 , TraesCS2D02G013600 , TraesCS2D02G013600
Populus -


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cDNA sequences
Sobic.006G013100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G126500 - K14808: DDX54, ATP-dependent RNA helicase DDX54/DBP10
2 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
3 Sobic.001G393900 FAD binding domain containing protein, expressed -
4 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
5 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
6 Sobic.001G417500 expressed protein -
7 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
8 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
9 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
10 Sobic.004G351800 PPR repeat containing protein, expressed -
11 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
12 Sobic.008G147200 tubulin, putative, expressed -
13 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
14 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
15 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
16 Sobic.001G355200 tRNA pseudouridine synthase family protein, putative, expressed K01855: PUS3, tRNA pseudouridine38/39 synthase
17 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
18 Sobic.007G201700 mTERF domain containing protein, expressed -
19 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
20 Sobic.002G279800 M phase phosphoprotein 10, putative, expressed K14559: U3 small nucleolar RNA-associated protein MPP10


Gene co-expression network
sample Sobic006G013100 Sobic006G013100 Sobic007G126500 Sobic007G126500 Sobic006G013100--Sobic007G126500 Sobic005G000300 Sobic005G000300 Sobic006G013100--Sobic005G000300 Sobic001G393900 Sobic001G393900 Sobic006G013100--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic006G013100--Sobic006G269800 Sobic007G014800 Sobic007G014800 Sobic006G013100--Sobic007G014800 Sobic001G417500 Sobic001G417500 Sobic006G013100--Sobic001G417500 Sobic003G042400 Sobic003G042400 Sobic006G013100--Sobic003G042400 Sobic006G226300 Sobic006G226300 Sobic006G013100--Sobic006G226300 Sobic001G173800 Sobic001G173800 Sobic006G013100--Sobic001G173800 Sobic001G376900 Sobic001G376900 Sobic007G126500--Sobic001G376900 Sobic007G126500--Sobic003G042400 Sobic007G126500--Sobic006G013100 Sobic001G453000 Sobic001G453000 Sobic007G126500--Sobic001G453000 Sobic001G453400 Sobic001G453400 Sobic007G126500--Sobic001G453400 Sobic007G126500--Sobic001G393900 Sobic009G158100 Sobic009G158100 Sobic007G126500--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic007G126500--Sobic001G145400 Sobic007G168300 Sobic007G168300 Sobic007G126500--Sobic007G168300 Sobic002G112600 Sobic002G112600 Sobic005G000300--Sobic002G112600 Sobic004G031300 Sobic004G031300 Sobic005G000300--Sobic004G031300 Sobic010G091500 Sobic010G091500 Sobic005G000300--Sobic010G091500 Sobic003G123200 Sobic003G123200 Sobic005G000300--Sobic003G123200 Sobic010G224700 Sobic010G224700 Sobic005G000300--Sobic010G224700 Sobic001G334100 Sobic001G334100 Sobic005G000300--Sobic001G334100 Sobic009G246500 Sobic009G246500 Sobic005G000300--Sobic009G246500 Sobic002G378100 Sobic002G378100 Sobic005G000300--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic005G000300--Sobic008G163500 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic001G393900--Sobic003G042400 Sobic002G145800 Sobic002G145800 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic003G123100 Sobic003G123100 Sobic007G014800--Sobic003G123100 Sobic009G142000 Sobic009G142000 Sobic007G014800--Sobic009G142000 Sobic004G086200 Sobic004G086200 Sobic007G014800--Sobic004G086200 Sobic007G014800--Sobic002G112600 Sobic001G346900 Sobic001G346900 Sobic007G014800--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic007G014800--Sobic004G285000 Sobic004G215900 Sobic004G215900 Sobic007G014800--Sobic004G215900 Sobic007G014800--Sobic006G226300 Sobic007G014800--Sobic008G163500 Sobic001G417500--Sobic006G269800 Sobic004G351800 Sobic004G351800 Sobic001G417500--Sobic004G351800 Sobic001G417500--Sobic003G309050 Sobic001G417500--Sobic002G043100 Sobic001G417500--Sobic001G393900 Sobic001G417500--Sobic008G017100 Sobic001G417500--Sobic004G107200 Sobic001G417500--Sobic007G173500 Sobic007G000300 Sobic007G000300 Sobic001G417500--Sobic007G000300 Sobic003G042400--Sobic007G168300 Sobic003G042400--Sobic001G376900 Sobic003G042400--Sobic001G346900 Sobic003G042400--Sobic009G158100 Sobic003G042400--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic003G042400--Sobic001G052400 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic003G042400--Sobic007G126500 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic006G226300--Sobic003G042400 Sobic006G226300--Sobic004G285000 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic003G258900 Sobic003G258900 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G501400 Sobic001G501400 Sobic001G173800--Sobic001G501400 Sobic001G173800--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G173800--Sobic008G049100 Sobic009G173600 Sobic009G173600 Sobic001G173800--Sobic009G173600 Sobic009G235200 Sobic009G235200 Sobic001G173800--Sobic009G235200 Sobic003G156500 Sobic003G156500 Sobic001G173800--Sobic003G156500 Sobic001G173800--Sobic009G246500 Sobic001G173800--Sobic005G000300
Octagon: transcription factors


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