Gene annotation
Transcriptome id Sobic.007G126500.2
Synonym Sb07g020310
Functional annotation -
UniProt C6JSU8 , A0A120GUE9 , A0A1Z5R9N5
Pfam PF08147 PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF292
NCBI CDD -
KEGG Orthology K14808; DDX54, ATP-dependent RNA helicase DDX54/DBP10
Gene Ontology GO:0016818; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0005634nucleus GO:0005524ATP binding GO:0003723RNA binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G77030 : hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases
RAP-DB (Rice) LOC_Os08g32090.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a031036 , Zm00025a054014
Brachypodium KQJ98274
Barley HORVU4Hr1G083970.2 , HORVU4Hr1G083970.1 , HORVU4Hr1G083970.7 , HORVU4Hr1G083970.6 , HORVU4Hr1G083970.5 , HORVU4Hr1G083970.4
Wheat TraesCS4D02G337100 , TraesCS5A02G510500 , TraesCS4B02G341100
Populus -


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cDNA sequences
Sobic.007G126500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
2 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
3 Sobic.006G013100 expressed protein K13205: AAR2, A1 cistron-splicing factor AAR2
4 Sobic.001G453000 no apical meristem protein, putative, expressed -
5 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
6 Sobic.001G393900 FAD binding domain containing protein, expressed -
7 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
8 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
9 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
10 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
11 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
12 Sobic.006G040800 expressed protein -
13 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
14 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
15 Sobic.006G125500 expressed protein -
16 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
17 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
18 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
19 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
20 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1


Gene co-expression network
sample Sobic007G126500 Sobic007G126500 Sobic001G376900 Sobic001G376900 Sobic007G126500--Sobic001G376900 Sobic003G042400 Sobic003G042400 Sobic007G126500--Sobic003G042400 Sobic006G013100 Sobic006G013100 Sobic007G126500--Sobic006G013100 Sobic001G453000 Sobic001G453000 Sobic007G126500--Sobic001G453000 Sobic001G453400 Sobic001G453400 Sobic007G126500--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic007G126500--Sobic001G393900 Sobic009G158100 Sobic009G158100 Sobic007G126500--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic007G126500--Sobic001G145400 Sobic007G168300 Sobic007G168300 Sobic007G126500--Sobic007G168300 Sobic001G376900--Sobic003G042400 Sobic001G376900--Sobic001G453400 Sobic001G376900--Sobic007G126500 Sobic006G086600 Sobic006G086600 Sobic001G376900--Sobic006G086600 Sobic001G376900--Sobic009G158100 Sobic001G376900--Sobic007G168300 Sobic004G224600 Sobic004G224600 Sobic001G376900--Sobic004G224600 Sobic001G052400 Sobic001G052400 Sobic001G376900--Sobic001G052400 Sobic001G376900--Sobic001G393900 Sobic003G042400--Sobic007G168300 Sobic003G042400--Sobic001G376900 Sobic001G346900 Sobic001G346900 Sobic003G042400--Sobic001G346900 Sobic003G042400--Sobic009G158100 Sobic003G042400--Sobic001G145400 Sobic003G042400--Sobic001G052400 Sobic008G147200 Sobic008G147200 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic003G042400--Sobic007G126500 Sobic006G013100--Sobic007G126500 Sobic005G000300 Sobic005G000300 Sobic006G013100--Sobic005G000300 Sobic006G013100--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic006G013100--Sobic006G269800 Sobic007G014800 Sobic007G014800 Sobic006G013100--Sobic007G014800 Sobic001G417500 Sobic001G417500 Sobic006G013100--Sobic001G417500 Sobic006G013100--Sobic003G042400 Sobic006G226300 Sobic006G226300 Sobic006G013100--Sobic006G226300 Sobic001G173800 Sobic001G173800 Sobic006G013100--Sobic001G173800 Sobic001G453000--Sobic007G168300 Sobic003G294600 Sobic003G294600 Sobic001G453000--Sobic003G294600 Sobic009G142000 Sobic009G142000 Sobic001G453000--Sobic009G142000 Sobic001G453000--Sobic003G042400 Sobic007G155500 Sobic007G155500 Sobic001G453000--Sobic007G155500 Sobic002G396500 Sobic002G396500 Sobic001G453000--Sobic002G396500 Sobic004G085000 Sobic004G085000 Sobic001G453000--Sobic004G085000 Sobic002G179400 Sobic002G179400 Sobic001G453000--Sobic002G179400 Sobic010G114900 Sobic010G114900 Sobic001G453000--Sobic010G114900 Sobic010G003400 Sobic010G003400 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic001G453400--Sobic010G114900 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic001G393900--Sobic003G042400 Sobic003G095900 Sobic003G095900 Sobic009G158100--Sobic003G095900 Sobic009G158100--Sobic003G042400 Sobic009G158100--Sobic001G089600 Sobic009G158100--Sobic006G267600 Sobic002G275600 Sobic002G275600 Sobic009G158100--Sobic002G275600 Sobic009G158100--Sobic001G376900 Sobic004G320500 Sobic004G320500 Sobic009G158100--Sobic004G320500 Sobic004G260100 Sobic004G260100 Sobic009G158100--Sobic004G260100 Sobic010G275500 Sobic010G275500 Sobic009G158100--Sobic010G275500 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic001G145400--Sobic004G085000 Sobic007G168300--Sobic003G042400 Sobic005G200800 Sobic005G200800 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic002G154000 Sobic002G154000 Sobic007G168300--Sobic002G154000 Sobic009G126300 Sobic009G126300 Sobic007G168300--Sobic009G126300 Sobic007G183300 Sobic007G183300 Sobic007G168300--Sobic007G183300 Sobic007G168300--Sobic001G453000 Sobic007G168300--Sobic001G376900 Sobic005G200900 Sobic005G200900 Sobic007G168300--Sobic005G200900
Octagon: transcription factors


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