Gene annotation
Transcriptome id Sobic.001G355200.4,Sobic.001G355200.1,Sobic.001G355200.3
Synonym Sb01g033960
Functional annotation tRNA pseudouridine synthase family protein, putative, expressed
UniProt C5WYL0
Pfam PF01416
Panther DB PTHR11142 PTHR11142:SF5
NCBI CDD KOG2554; Pseudouridylate synthase
KEGG Orthology K01855; PUS3, tRNA pseudouridine38/39 synthase
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT1G34150 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os03g26440.1 : tRNA pseudouridine synthase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002674
Brachypodium KQK21488
Barley HORVU3Hr1G016330.49 , HORVU3Hr1G016330.48 , HORVU3Hr1G016330.45 , HORVU3Hr1G016330.44 , HORVU3Hr1G016330.47 , HORVU3Hr1G016330.46 , HORVU3Hr1G016330.41 , HORVU3Hr1G016330.43 , HORVU3Hr1G016330.42 , HORVU3Hr1G016330.52 , HORVU3Hr1G016330.53 , HORVU3Hr1G016330.50 , HORVU3Hr1G016330.51 , HORVU3Hr1G016330.56 , HORVU3Hr1G016330.54 , HORVU3Hr1G016330.55 , HORVU3Hr1G016330.58 , HORVU3Hr1G016330.59 , HORVU3Hr1G016330.40 , HORVU3Hr1G016330.27 , HORVU3Hr1G016330.26 , HORVU3Hr1G016330.24 , HORVU3Hr1G016330.23 , HORVU3Hr1G016330.22 , HORVU3Hr1G016330.21 , HORVU3Hr1G016330.20 , HORVU3Hr1G016330.29 , HORVU3Hr1G016330.28 , HORVU3Hr1G016330.34 , HORVU3Hr1G016330.35 , HORVU3Hr1G016330.36 , HORVU3Hr1G016330.37 , HORVU3Hr1G016330.30 , HORVU3Hr1G016330.31 , HORVU3Hr1G016330.32 , HORVU3Hr1G016330.33 , HORVU3Hr1G016330.38 , HORVU3Hr1G016330.39 , HORVU3Hr1G016330.61 , HORVU3Hr1G016330.60 , HORVU3Hr1G016330.18 , HORVU3Hr1G016330.19 , HORVU3Hr1G016330.16 , HORVU3Hr1G016330.17 , HORVU3Hr1G016330.14 , HORVU3Hr1G016330.15 , HORVU3Hr1G016330.12 , HORVU3Hr1G016330.13 , HORVU3Hr1G016330.10 , HORVU3Hr1G016330.11 , HORVU3Hr1G016330.57 , HORVU3Hr1G016330.8 , HORVU3Hr1G016330.9 , HORVU3Hr1G016330.4 , HORVU3Hr1G016330.5 , HORVU3Hr1G016330.6 , HORVU3Hr1G016330.7 , HORVU3Hr1G016330.1 , HORVU3Hr1G016330.2 , HORVU3Hr1G016330.3
Wheat TraesCS3D02G091500 , TraesCS3A02G091600 , TraesCS3D02G091500 , TraesCS3A02G091600
Populus -


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cDNA sequences
Sobic.001G355200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G393900 FAD binding domain containing protein, expressed -
2 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
3 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
4 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
5 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
6 Sobic.005G200800 homeobox domain containing protein, expressed -
7 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
8 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
9 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
10 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
11 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
12 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
13 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
14 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
15 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
16 Sobic.007G173500 growth regulator related protein, putative, expressed -
17 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
18 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
19 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
20 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G355200 Sobic001G355200 Sobic001G393900 Sobic001G393900 Sobic001G355200--Sobic001G393900 Sobic004G340400 Sobic004G340400 Sobic001G355200--Sobic004G340400 Sobic001G052400 Sobic001G052400 Sobic001G355200--Sobic001G052400 Sobic004G320500 Sobic004G320500 Sobic001G355200--Sobic004G320500 Sobic001G346900 Sobic001G346900 Sobic001G355200--Sobic001G346900 Sobic005G200800 Sobic005G200800 Sobic001G355200--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic001G355200--Sobic009G119000 Sobic003G188400 Sobic003G188400 Sobic001G355200--Sobic003G188400 Sobic008G014500 Sobic008G014500 Sobic001G355200--Sobic008G014500 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic001G145400 Sobic001G145400 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic001G052400--Sobic004G320500 Sobic010G003400 Sobic010G003400 Sobic001G052400--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic001G052400--Sobic003G042400 Sobic001G052400--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic006G125900 Sobic006G125900 Sobic001G052400--Sobic006G125900 Sobic004G320500--Sobic001G052400 Sobic004G320500--Sobic006G086600 Sobic004G320500--Sobic004G340400 Sobic002G256700 Sobic002G256700 Sobic004G320500--Sobic002G256700 Sobic001G493700 Sobic001G493700 Sobic004G320500--Sobic001G493700 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic003G214600 Sobic003G214600 Sobic005G200800--Sobic003G214600 Sobic007G183300 Sobic007G183300 Sobic005G200800--Sobic007G183300 Sobic007G168300 Sobic007G168300 Sobic005G200800--Sobic007G168300 Sobic002G029100 Sobic002G029100 Sobic005G200800--Sobic002G029100 Sobic002G154000 Sobic002G154000 Sobic005G200800--Sobic002G154000 Sobic001G461400 Sobic001G461400 Sobic005G200800--Sobic001G461400 Sobic005G200800--Sobic009G255600 Sobic001G063700 Sobic001G063700 Sobic005G200800--Sobic001G063700 Sobic005G200800--Sobic003G416700 Sobic002G153700 Sobic002G153700 Sobic009G119000--Sobic002G153700 Sobic003G059750 Sobic003G059750 Sobic009G119000--Sobic003G059750 Sobic002G071500 Sobic002G071500 Sobic009G119000--Sobic002G071500 Sobic010G065300 Sobic010G065300 Sobic009G119000--Sobic010G065300 Sobic008G153000 Sobic008G153000 Sobic009G119000--Sobic008G153000 Sobic010G275500 Sobic010G275500 Sobic009G119000--Sobic010G275500 Sobic009G119000--Sobic003G416700 Sobic004G048800 Sobic004G048800 Sobic009G119000--Sobic004G048800 Sobic001G311500 Sobic001G311500 Sobic009G119000--Sobic001G311500 Sobic001G433800 Sobic001G433800 Sobic003G188400--Sobic001G433800 Sobic003G188400--Sobic001G063700 Sobic003G360400 Sobic003G360400 Sobic003G188400--Sobic003G360400 Sobic002G133300 Sobic002G133300 Sobic003G188400--Sobic002G133300 Sobic003G095900 Sobic003G095900 Sobic003G188400--Sobic003G095900 Sobic002G317200 Sobic002G317200 Sobic003G188400--Sobic002G317200 Sobic007G159900 Sobic007G159900 Sobic003G188400--Sobic007G159900 Sobic010G112100 Sobic010G112100 Sobic003G188400--Sobic010G112100 Sobic003G188400--Sobic001G311500 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600
Octagon: transcription factors


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