Gene annotation
Transcriptome id Sobic.001G501400.1
Synonym Sb01g046850
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5WXV5
Pfam PF04003 PF00400
Panther DB PTHR19853 PTHR19853:SF0
NCBI CDD -
KEGG Orthology K14556; DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G21540 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os03g05720.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000691
Brachypodium KQK23615
Barley HORVU4Hr1G083410.8 , HORVU4Hr1G083410.1 , HORVU4Hr1G083410.2 , HORVU4Hr1G083410.3 , HORVU4Hr1G083410.4 , HORVU4Hr1G083410.5 , HORVU4Hr1G083410.6 , HORVU4Hr1G083410.7
Wheat TraesCS4B02G317800 , TraesCS4A02G370000 , TraesCS4A02G370000
Populus -


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cDNA sequences
Sobic.001G501400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G358600 LTV1, putative, expressed K14798: protein LTV1
2 Sobic.006G128400 PPR repeat containing protein, expressed -
3 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
4 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
5 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
6 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
7 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
8 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
9 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
10 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
11 Sobic.004G030800 expressed protein -
12 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
13 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
14 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
15 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
16 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
17 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
18 Sobic.002G092050 - -
19 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
20 Sobic.004G027500 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)


Gene co-expression network
sample Sobic001G501400 Sobic001G501400 Sobic001G358600 Sobic001G358600 Sobic001G501400--Sobic001G358600 Sobic006G128400 Sobic006G128400 Sobic001G501400--Sobic006G128400 Sobic003G156500 Sobic003G156500 Sobic001G501400--Sobic003G156500 Sobic001G173800 Sobic001G173800 Sobic001G501400--Sobic001G173800 Sobic006G125900 Sobic006G125900 Sobic001G501400--Sobic006G125900 Sobic008G049100 Sobic008G049100 Sobic001G501400--Sobic008G049100 Sobic010G003400 Sobic010G003400 Sobic001G501400--Sobic010G003400 Sobic002G378100 Sobic002G378100 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic001G358600--Sobic001G501400 Sobic001G358600--Sobic003G156500 Sobic003G275600 Sobic003G275600 Sobic001G358600--Sobic003G275600 Sobic001G358600--Sobic001G173800 Sobic001G358600--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G358600--Sobic001G453400 Sobic001G358600--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic001G358600--Sobic002G262100 Sobic009G246500 Sobic009G246500 Sobic001G358600--Sobic009G246500 Sobic006G128400--Sobic002G378100 Sobic006G128400--Sobic001G501400 Sobic002G092050 Sobic002G092050 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic006G128400--Sobic008G165900 Sobic007G075800 Sobic007G075800 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic003G156500--Sobic001G453400 Sobic009G217200 Sobic009G217200 Sobic003G156500--Sobic009G217200 Sobic003G156500--Sobic001G501400 Sobic003G156500--Sobic010G003400 Sobic003G260400 Sobic003G260400 Sobic003G156500--Sobic003G260400 Sobic001G503900 Sobic001G503900 Sobic003G156500--Sobic001G503900 Sobic003G156500--Sobic001G358600 Sobic010G102600 Sobic010G102600 Sobic003G156500--Sobic010G102600 Sobic004G320500 Sobic004G320500 Sobic003G156500--Sobic004G320500 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G173800--Sobic001G501400 Sobic008G163500 Sobic008G163500 Sobic001G173800--Sobic008G163500 Sobic001G173800--Sobic008G049100 Sobic009G173600 Sobic009G173600 Sobic001G173800--Sobic009G173600 Sobic009G235200 Sobic009G235200 Sobic001G173800--Sobic009G235200 Sobic001G173800--Sobic003G156500 Sobic001G173800--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic001G173800--Sobic005G000300 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic006G125900--Sobic010G003400 Sobic010G205900 Sobic010G205900 Sobic008G049100--Sobic010G205900 Sobic002G071400 Sobic002G071400 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic008G049100--Sobic003G199300 Sobic003G123200 Sobic003G123200 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic008G049100--Sobic006G193300 Sobic006G086600 Sobic006G086600 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic006G193300--Sobic004G340400 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic006G193300--Sobic008G049100 Sobic006G193300--Sobic009G246500 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic006G193300--Sobic003G199300
Octagon: transcription factors


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