Gene annotation
Transcriptome id Sobic.001G358600.4,Sobic.001G358600.3
Synonym
Functional annotation LTV1, putative, expressed
UniProt A0A1Z5S9D8 , A0A1Z5S9B9
Pfam PF04180
Panther DB PTHR21531
NCBI CDD KOG2637; Uncharacterized conserved protein
KEGG Orthology K14798; protein LTV1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49990 : -
RAP-DB (Rice) LOC_Os03g25620.1 : LTV1, putative, expressed
MaizeGDB (Corn) Zm00025a058041 , Zm00025a002646 , Zm00025a052293 , Zm00025a052295
Brachypodium KQK21534 , KQK21532 , KQK21533
Barley HORVU5Hr1G071840.3 , HORVU5Hr1G071840.2 , HORVU5Hr1G071840.1 , HORVU5Hr1G071840.4
Wheat TraesCS5A02G256700 , TraesCS5B02G256200 , TraesCS5D02G265300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G358600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
2 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
3 Sobic.003G275600 ribosomal RNA assembly protein mis3, putative, expressed K06961: ribosomal RNA assembly protein
4 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
5 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
6 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
7 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
8 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
9 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
10 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
11 Sobic.002G279800 M phase phosphoprotein 10, putative, expressed K14559: U3 small nucleolar RNA-associated protein MPP10
12 Sobic.006G128400 PPR repeat containing protein, expressed -
13 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
14 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
15 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
16 Sobic.004G027500 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
17 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
18 Sobic.001G503900 MT-A70 domain containing protein, expressed -
19 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
20 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)


Gene co-expression network
sample Sobic001G358600 Sobic001G358600 Sobic001G501400 Sobic001G501400 Sobic001G358600--Sobic001G501400 Sobic003G156500 Sobic003G156500 Sobic001G358600--Sobic003G156500 Sobic003G275600 Sobic003G275600 Sobic001G358600--Sobic003G275600 Sobic001G173800 Sobic001G173800 Sobic001G358600--Sobic001G173800 Sobic010G003400 Sobic010G003400 Sobic001G358600--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G358600--Sobic001G453400 Sobic006G125900 Sobic006G125900 Sobic001G358600--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic001G358600--Sobic002G262100 Sobic009G246500 Sobic009G246500 Sobic001G358600--Sobic009G246500 Sobic001G501400--Sobic001G358600 Sobic006G128400 Sobic006G128400 Sobic001G501400--Sobic006G128400 Sobic001G501400--Sobic003G156500 Sobic001G501400--Sobic001G173800 Sobic001G501400--Sobic006G125900 Sobic008G049100 Sobic008G049100 Sobic001G501400--Sobic008G049100 Sobic001G501400--Sobic010G003400 Sobic002G378100 Sobic002G378100 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic003G156500--Sobic001G453400 Sobic009G217200 Sobic009G217200 Sobic003G156500--Sobic009G217200 Sobic003G156500--Sobic001G501400 Sobic003G156500--Sobic010G003400 Sobic003G260400 Sobic003G260400 Sobic003G156500--Sobic003G260400 Sobic001G503900 Sobic001G503900 Sobic003G156500--Sobic001G503900 Sobic003G156500--Sobic001G358600 Sobic010G102600 Sobic010G102600 Sobic003G156500--Sobic010G102600 Sobic004G320500 Sobic004G320500 Sobic003G156500--Sobic004G320500 Sobic003G275600--Sobic001G358600 Sobic004G027500 Sobic004G027500 Sobic003G275600--Sobic004G027500 Sobic003G275600--Sobic003G156500 Sobic001G376400 Sobic001G376400 Sobic003G275600--Sobic001G376400 Sobic003G275600--Sobic001G453400 Sobic003G275600--Sobic001G501400 Sobic002G052700 Sobic002G052700 Sobic003G275600--Sobic002G052700 Sobic010G206300 Sobic010G206300 Sobic003G275600--Sobic010G206300 Sobic002G047000 Sobic002G047000 Sobic003G275600--Sobic002G047000 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G173800--Sobic001G501400 Sobic008G163500 Sobic008G163500 Sobic001G173800--Sobic008G163500 Sobic001G173800--Sobic008G049100 Sobic009G173600 Sobic009G173600 Sobic001G173800--Sobic009G173600 Sobic009G235200 Sobic009G235200 Sobic001G173800--Sobic009G235200 Sobic001G173800--Sobic003G156500 Sobic001G173800--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic001G173800--Sobic005G000300 Sobic006G086600 Sobic006G086600 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G453400--Sobic001G089600 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic006G125900--Sobic010G003400 Sobic001G119600 Sobic001G119600 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G262100--Sobic002G378100 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic004G173100 Sobic004G173100 Sobic002G262100--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G262100--Sobic003G425100 Sobic006G198600 Sobic006G198600 Sobic002G262100--Sobic006G198600 Sobic009G246500--Sobic008G049100 Sobic010G205900 Sobic010G205900 Sobic009G246500--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic005G098800 Sobic005G098800 Sobic009G246500--Sobic005G098800 Sobic002G071400 Sobic002G071400 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G246500--Sobic009G101200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.