Gene annotation
Transcriptome id Sobic.008G165900.1
Synonym ATRH53, PMH2, Sb08g021180
Functional annotation similar to DEAD-box ATP-dependent RNA helicase 9 (PubMedID : 29862293)
-
UniProt C5YRW1
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF296
NCBI CDD KOG0331; ATP-dependent RNA helicase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G22330 : putative mitochondrial RNA helicase 2
RAP-DB (Rice) LOC_Os12g41715.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a004669 , Zm00025a025352
Brachypodium PNT62345 , PNT62344 , PNT62343 , PNT62342
Barley HORVU5Hr1G011460.5 , HORVU5Hr1G011460.4 , HORVU5Hr1G011460.2 , HORVU5Hr1G011460.1
Wheat TraesCS5D02G057800 , TraesCS5D02G057800 , TraesCS5A02G047300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
2 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
3 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
4 Sobic.006G128400 PPR repeat containing protein, expressed -
5 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
6 Sobic.001G207200 MEE12, putative, expressed -
7 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
8 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
9 Sobic.002G031700 - -
10 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
11 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
12 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
13 Sobic.002G373950 - -
14 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
15 Sobic.004G030800 expressed protein -
16 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
17 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
18 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
19 Sobic.002G092050 - -
20 Sobic.004G025800 phosphoribosyl transferase, putative, expressed K00948: PRPS, ribose-phosphate pyrophosphokinase


Gene co-expression network
sample Sobic008G165900 Sobic008G165900 Sobic001G224200 Sobic001G224200 Sobic008G165900--Sobic001G224200 Sobic003G332900 Sobic003G332900 Sobic008G165900--Sobic003G332900 Sobic002G238000 Sobic002G238000 Sobic008G165900--Sobic002G238000 Sobic006G128400 Sobic006G128400 Sobic008G165900--Sobic006G128400 Sobic007G075800 Sobic007G075800 Sobic008G165900--Sobic007G075800 Sobic001G207200 Sobic001G207200 Sobic008G165900--Sobic001G207200 Sobic010G100800 Sobic010G100800 Sobic008G165900--Sobic010G100800 Sobic001G501300 Sobic001G501300 Sobic008G165900--Sobic001G501300 Sobic002G031700 Sobic002G031700 Sobic008G165900--Sobic002G031700 Sobic001G224200--Sobic008G165900 Sobic001G224200--Sobic006G128400 Sobic001G224200--Sobic001G207200 Sobic001G224200--Sobic007G075800 Sobic001G224200--Sobic002G238000 Sobic001G119600 Sobic001G119600 Sobic001G224200--Sobic001G119600 Sobic001G224200--Sobic003G332900 Sobic001G501400 Sobic001G501400 Sobic001G224200--Sobic001G501400 Sobic004G030800 Sobic004G030800 Sobic001G224200--Sobic004G030800 Sobic003G332900--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic003G332900--Sobic010G211500 Sobic004G231600 Sobic004G231600 Sobic003G332900--Sobic004G231600 Sobic003G332900--Sobic001G207200 Sobic008G022701 Sobic008G022701 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic003G332900--Sobic006G128400 Sobic005G100900 Sobic005G100900 Sobic002G238000--Sobic005G100900 Sobic002G238000--Sobic008G165900 Sobic009G071700 Sobic009G071700 Sobic002G238000--Sobic009G071700 Sobic006G125900 Sobic006G125900 Sobic002G238000--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G238000--Sobic002G262100 Sobic010G228700 Sobic010G228700 Sobic002G238000--Sobic010G228700 Sobic002G238000--Sobic001G224200 Sobic002G092050 Sobic002G092050 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100 Sobic002G378100 Sobic002G378100 Sobic006G128400--Sobic002G378100 Sobic006G128400--Sobic001G501400 Sobic006G128400--Sobic002G092050 Sobic006G128400--Sobic001G224200 Sobic006G128400--Sobic008G165900 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic007G075800--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic007G075800--Sobic004G030800 Sobic007G075800--Sobic008G165900 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G207200--Sobic001G501300 Sobic009G036300 Sobic009G036300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic009G052700 Sobic009G052700 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic001G207200--Sobic003G332900 Sobic001G207200--Sobic001G224200 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic003G193200 Sobic003G193200 Sobic010G100800--Sobic003G193200 Sobic001G501300--Sobic010G100800 Sobic001G501300--Sobic001G207200 Sobic004G262700 Sobic004G262700 Sobic001G501300--Sobic004G262700 Sobic010G176300 Sobic010G176300 Sobic001G501300--Sobic010G176300 Sobic001G501300--Sobic008G165900 Sobic002G167500 Sobic002G167500 Sobic001G501300--Sobic002G167500 Sobic001G501300--Sobic005G026000 Sobic001G501300--Sobic003G193200 Sobic001G501300--Sobic002G031700 Sobic002G031700--Sobic007G075800 Sobic002G031700--Sobic002G155000 Sobic002G031700--Sobic010G100800 Sobic002G031700--Sobic008G165900 Sobic003G134000 Sobic003G134000 Sobic002G031700--Sobic003G134000 Sobic002G031700--Sobic001G501300 Sobic007G097400 Sobic007G097400 Sobic002G031700--Sobic007G097400 Sobic002G031700--Sobic003G193200 Sobic002G031700--Sobic001G207200
Octagon: transcription factors


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