Gene annotation
Transcriptome id Sobic.007G097400.7,Sobic.007G097400.4,Sobic.007G097400.5,Sobic.007G097400.6,Sobic.007G097400.8,Sobic.007G097400.3
Synonym
Functional annotation sin-like protein conserved region containing protein, expressed
UniProt A0A1Z5R905 , A0A1Z5R9W8
Pfam PF04801
Panther DB PTHR12069
NCBI CDD KOG2354; RNA Polymerase C (III) 37 kDa subunit
KEGG Orthology K14721; RPC5, DNA-directed RNA polymerase III subunit RPC5
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003899DNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT5G49530 : SIN-like family protein
RAP-DB (Rice) LOC_Os08g16780.1 : sin-like protein conserved region containing protein, expressed
MaizeGDB (Corn) Zm00025a041197
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G276200 ACI13, putative, expressed -
3 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
4 Sobic.004G171200 WD domain, G-beta repeat domain containing protein, expressed K13124: mitogen-activated protein kinase organizer 1
5 Sobic.001G450000 nucleoporin, putative, expressed K14300: nuclear pore complex protein Nup133
6 Sobic.003G209400 expressed protein -
7 Sobic.006G128400 PPR repeat containing protein, expressed -
8 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
9 Sobic.006G137600 AT hook motif family protein, expressed -
10 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
11 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
12 Sobic.002G318800 - K14776: DDX10, ATP-dependent RNA helicase DDX10/DBP4
13 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
14 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
15 Sobic.004G337800 UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed K11718: UDP-glucose:glycoprotein glucosyltransferase
16 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
17 Sobic.002G031700 - -
18 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
19 Sobic.002G298100 expressed protein -
20 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1


Gene co-expression network
sample Sobic007G097400 Sobic007G097400 Sobic009G213200 Sobic009G213200 Sobic007G097400--Sobic009G213200 Sobic001G276200 Sobic001G276200 Sobic007G097400--Sobic001G276200 Sobic010G100800 Sobic010G100800 Sobic007G097400--Sobic010G100800 Sobic004G171200 Sobic004G171200 Sobic007G097400--Sobic004G171200 Sobic001G450000 Sobic001G450000 Sobic007G097400--Sobic001G450000 Sobic003G209400 Sobic003G209400 Sobic007G097400--Sobic003G209400 Sobic006G128400 Sobic006G128400 Sobic007G097400--Sobic006G128400 Sobic006G125900 Sobic006G125900 Sobic007G097400--Sobic006G125900 Sobic006G137600 Sobic006G137600 Sobic007G097400--Sobic006G137600 Sobic006G185200 Sobic006G185200 Sobic009G213200--Sobic006G185200 Sobic002G378100 Sobic002G378100 Sobic009G213200--Sobic002G378100 Sobic009G213200--Sobic007G097400 Sobic001G214600 Sobic001G214600 Sobic009G213200--Sobic001G214600 Sobic002G373950 Sobic002G373950 Sobic009G213200--Sobic002G373950 Sobic010G147833 Sobic010G147833 Sobic009G213200--Sobic010G147833 Sobic005G160100 Sobic005G160100 Sobic009G213200--Sobic005G160100 Sobic006G231800 Sobic006G231800 Sobic009G213200--Sobic006G231800 Sobic009G251200 Sobic009G251200 Sobic009G213200--Sobic009G251200 Sobic006G077200 Sobic006G077200 Sobic001G276200--Sobic006G077200 Sobic001G449900 Sobic001G449900 Sobic001G276200--Sobic001G449900 Sobic001G493200 Sobic001G493200 Sobic001G276200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic001G276200--Sobic003G249600 Sobic004G096400 Sobic004G096400 Sobic001G276200--Sobic004G096400 Sobic006G207200 Sobic006G207200 Sobic001G276200--Sobic006G207200 Sobic003G405500 Sobic003G405500 Sobic001G276200--Sobic003G405500 Sobic003G057700 Sobic003G057700 Sobic001G276200--Sobic003G057700 Sobic001G276200--Sobic007G097400 Sobic001G501300 Sobic001G501300 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic002G031700 Sobic002G031700 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic003G193200 Sobic003G193200 Sobic010G100800--Sobic003G193200 Sobic008G051200 Sobic008G051200 Sobic004G171200--Sobic008G051200 Sobic002G298100 Sobic002G298100 Sobic004G171200--Sobic002G298100 Sobic001G434200 Sobic001G434200 Sobic004G171200--Sobic001G434200 Sobic010G059500 Sobic010G059500 Sobic004G171200--Sobic010G059500 Sobic004G171200--Sobic001G493200 Sobic001G120500 Sobic001G120500 Sobic004G171200--Sobic001G120500 Sobic009G239200 Sobic009G239200 Sobic004G171200--Sobic009G239200 Sobic006G155100 Sobic006G155100 Sobic004G171200--Sobic006G155100 Sobic004G171200--Sobic007G097400 Sobic003G375200 Sobic003G375200 Sobic001G450000--Sobic003G375200 Sobic002G318800 Sobic002G318800 Sobic001G450000--Sobic002G318800 Sobic001G450000--Sobic007G097400 Sobic001G020000 Sobic001G020000 Sobic001G450000--Sobic001G020000 Sobic002G412700 Sobic002G412700 Sobic001G450000--Sobic002G412700 Sobic006G029100 Sobic006G029100 Sobic001G450000--Sobic006G029100 Sobic010G080700 Sobic010G080700 Sobic001G450000--Sobic010G080700 Sobic001G451300 Sobic001G451300 Sobic001G450000--Sobic001G451300 Sobic006G047900 Sobic006G047900 Sobic001G450000--Sobic006G047900 Sobic009G007700 Sobic009G007700 Sobic003G209400--Sobic009G007700 Sobic003G209400--Sobic002G412700 Sobic006G112700 Sobic006G112700 Sobic003G209400--Sobic006G112700 Sobic010G085200 Sobic010G085200 Sobic003G209400--Sobic010G085200 Sobic008G080500 Sobic008G080500 Sobic003G209400--Sobic008G080500 Sobic003G209400--Sobic007G097400 Sobic004G034700 Sobic004G034700 Sobic003G209400--Sobic004G034700 Sobic008G017100 Sobic008G017100 Sobic003G209400--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic003G209400--Sobic002G356600 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic002G092050 Sobic002G092050 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic006G128400--Sobic008G165900 Sobic007G075800 Sobic007G075800 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic010G053600 Sobic010G053600 Sobic006G137600--Sobic010G053600 Sobic006G137600--Sobic001G020000 Sobic001G352900 Sobic001G352900 Sobic006G137600--Sobic001G352900 Sobic009G142000 Sobic009G142000 Sobic006G137600--Sobic009G142000 Sobic001G172700 Sobic001G172700 Sobic006G137600--Sobic001G172700 Sobic007G171100 Sobic007G171100 Sobic006G137600--Sobic007G171100 Sobic006G137600--Sobic001G451300 Sobic006G137600--Sobic002G412700 Sobic002G043100 Sobic002G043100 Sobic006G137600--Sobic002G043100
Octagon: transcription factors


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