Gene annotation
Transcriptome id Sobic.004G171200.1
Synonym Sb04g022240
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XU47
Pfam PF00400
Panther DB PTHR22842
NCBI CDD KOG0316; Conserved WD40 repeat-containing protein
KEGG Orthology K13124; mitogen-activated protein kinase organizer 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G64730 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g33860.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a031572 , Zm00025a031662
Brachypodium KQJ99811
Barley HORVU0Hr1G027010.6 , HORVU0Hr1G027010.4 , HORVU0Hr1G027010.2 , HORVU0Hr1G027010.3 , HORVU0Hr1G027010.1 , HORVU6Hr1G063000.3 , HORVU6Hr1G063000.2 , HORVU6Hr1G063000.1 , HORVU6Hr1G063000.5 , HORVU6Hr1G063000.4
Wheat TraesCS6A02G250200 , TraesCS6B02G275200 , TraesCS6B02G275200 , TraesCS6D02G232000
Populus -


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cDNA sequences
Sobic.004G171200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
2 Sobic.002G298100 expressed protein -
3 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
4 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
5 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
6 Sobic.001G120500 toc64, putative, expressed -
7 Sobic.009G239200 - -
8 Sobic.006G155100 expressed protein -
9 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
10 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
11 Sobic.006G217000 imidazoleglycerol-phosphate dehydratase, putative, expressed K01693: imidazoleglycerol-phosphate dehydratase
12 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
13 Sobic.002G092050 - -
14 Sobic.001G276200 ACI13, putative, expressed -
15 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
16 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
17 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
18 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
19 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
20 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase


Gene co-expression network
sample Sobic004G171200 Sobic004G171200 Sobic008G051200 Sobic008G051200 Sobic004G171200--Sobic008G051200 Sobic002G298100 Sobic002G298100 Sobic004G171200--Sobic002G298100 Sobic001G434200 Sobic001G434200 Sobic004G171200--Sobic001G434200 Sobic010G059500 Sobic010G059500 Sobic004G171200--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic004G171200--Sobic001G493200 Sobic001G120500 Sobic001G120500 Sobic004G171200--Sobic001G120500 Sobic009G239200 Sobic009G239200 Sobic004G171200--Sobic009G239200 Sobic006G155100 Sobic006G155100 Sobic004G171200--Sobic006G155100 Sobic007G097400 Sobic007G097400 Sobic004G171200--Sobic007G097400 Sobic008G051200--Sobic004G171200 Sobic001G251100 Sobic001G251100 Sobic008G051200--Sobic001G251100 Sobic006G125900 Sobic006G125900 Sobic008G051200--Sobic006G125900 Sobic004G185800 Sobic004G185800 Sobic008G051200--Sobic004G185800 Sobic008G051200--Sobic001G493200 Sobic001G089600 Sobic001G089600 Sobic008G051200--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic008G051200--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic008G051200--Sobic001G393900 Sobic004G030800 Sobic004G030800 Sobic008G051200--Sobic004G030800 Sobic009G251200 Sobic009G251200 Sobic002G298100--Sobic009G251200 Sobic010G098200 Sobic010G098200 Sobic002G298100--Sobic010G098200 Sobic010G140400 Sobic010G140400 Sobic002G298100--Sobic010G140400 Sobic004G018300 Sobic004G018300 Sobic002G298100--Sobic004G018300 Sobic002G298100--Sobic008G051200 Sobic002G298100--Sobic004G171200 Sobic005G160100 Sobic005G160100 Sobic002G298100--Sobic005G160100 Sobic003G434700 Sobic003G434700 Sobic002G298100--Sobic003G434700 Sobic001G219600 Sobic001G219600 Sobic002G298100--Sobic001G219600 Sobic007G071900 Sobic007G071900 Sobic001G434200--Sobic007G071900 Sobic006G093300 Sobic006G093300 Sobic001G434200--Sobic006G093300 Sobic006G039400 Sobic006G039400 Sobic001G434200--Sobic006G039400 Sobic001G468600 Sobic001G468600 Sobic001G434200--Sobic001G468600 Sobic001G333100 Sobic001G333100 Sobic001G434200--Sobic001G333100 Sobic001G434200--Sobic004G171200 Sobic008G087900 Sobic008G087900 Sobic001G434200--Sobic008G087900 Sobic004G121300 Sobic004G121300 Sobic001G434200--Sobic004G121300 Sobic001G014800 Sobic001G014800 Sobic001G434200--Sobic001G014800 Sobic009G084900 Sobic009G084900 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic001G145400 Sobic001G145400 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic006G077200 Sobic006G077200 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic010G265300 Sobic010G265300 Sobic001G120500--Sobic010G265300 Sobic005G172500 Sobic005G172500 Sobic001G120500--Sobic005G172500 Sobic001G244300 Sobic001G244300 Sobic001G120500--Sobic001G244300 Sobic001G120500--Sobic001G493200 Sobic006G217000 Sobic006G217000 Sobic001G120500--Sobic006G217000 Sobic007G103100 Sobic007G103100 Sobic001G120500--Sobic007G103100 Sobic001G120500--Sobic008G051200 Sobic009G056200 Sobic009G056200 Sobic001G120500--Sobic009G056200 Sobic009G193500 Sobic009G193500 Sobic001G120500--Sobic009G193500 Sobic006G216100 Sobic006G216100 Sobic009G239200--Sobic006G216100 Sobic001G405600 Sobic001G405600 Sobic009G239200--Sobic001G405600 Sobic009G239200--Sobic008G051200 Sobic009G239200--Sobic010G140400 Sobic002G347000 Sobic002G347000 Sobic009G239200--Sobic002G347000 Sobic007G017800 Sobic007G017800 Sobic009G239200--Sobic007G017800 Sobic009G239200--Sobic004G185800 Sobic009G239200--Sobic004G171200 Sobic007G105900 Sobic007G105900 Sobic009G239200--Sobic007G105900 Sobic008G090900 Sobic008G090900 Sobic006G155100--Sobic008G090900 Sobic004G003900 Sobic004G003900 Sobic006G155100--Sobic004G003900 Sobic001G433100 Sobic001G433100 Sobic006G155100--Sobic001G433100 Sobic006G155100--Sobic010G098200 Sobic001G478600 Sobic001G478600 Sobic006G155100--Sobic001G478600 Sobic006G155100--Sobic004G171200 Sobic002G356200 Sobic002G356200 Sobic006G155100--Sobic002G356200 Sobic001G346600 Sobic001G346600 Sobic006G155100--Sobic001G346600 Sobic006G155100--Sobic002G298100 Sobic009G213200 Sobic009G213200 Sobic007G097400--Sobic009G213200 Sobic001G276200 Sobic001G276200 Sobic007G097400--Sobic001G276200 Sobic010G100800 Sobic010G100800 Sobic007G097400--Sobic010G100800 Sobic007G097400--Sobic004G171200 Sobic001G450000 Sobic001G450000 Sobic007G097400--Sobic001G450000 Sobic003G209400 Sobic003G209400 Sobic007G097400--Sobic003G209400 Sobic006G128400 Sobic006G128400 Sobic007G097400--Sobic006G128400 Sobic007G097400--Sobic006G125900 Sobic006G137600 Sobic006G137600 Sobic007G097400--Sobic006G137600
Octagon: transcription factors


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