Gene annotation
Transcriptome id Sobic.004G019200.1
Synonym NRPA2
Functional annotation DNA-directed RNA polymerase I subunit RPA2, putative, expressed
UniProt C5XT13
Pfam PF04561 PF06883 PF04560 PF04565 PF04563 PF00562
Panther DB PTHR20856 PTHR20856:SF5
NCBI CDD -
KEGG Orthology K03002; RPA2, DNA-directed RNA polymerase I subunit RPA2
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G29940 : nuclear RNA polymerase A2
RAP-DB (Rice) LOC_Os10g35290.1 : DNA-directed RNA polymerase I subunit RPA2, putative, expressed
MaizeGDB (Corn) Zm00025a006471
Brachypodium PNT67640 , KQJ97293
Barley HORVU1Hr1G043520.44 , HORVU1Hr1G043520.45 , HORVU1Hr1G043520.42 , HORVU1Hr1G043520.43 , HORVU1Hr1G043520.40 , HORVU1Hr1G043520.41 , HORVU1Hr1G043520.1 , HORVU1Hr1G043520.2 , HORVU1Hr1G043520.5 , HORVU1Hr1G043520.7 , HORVU1Hr1G043520.9 , HORVU1Hr1G043520.33 , HORVU1Hr1G043520.32 , HORVU1Hr1G043520.31 , HORVU1Hr1G043520.30 , HORVU1Hr1G043520.37 , HORVU1Hr1G043520.36 , HORVU1Hr1G043520.35 , HORVU1Hr1G043520.34 , HORVU1Hr1G043520.39 , HORVU1Hr1G043520.38 , HORVU1Hr1G043520.20 , HORVU1Hr1G043520.21 , HORVU1Hr1G043520.22 , HORVU1Hr1G043520.23 , HORVU1Hr1G043520.24 , HORVU1Hr1G043520.25 , HORVU1Hr1G043520.26 , HORVU1Hr1G043520.27 , HORVU1Hr1G043520.28 , HORVU1Hr1G043520.29 , HORVU1Hr1G043520.15 , HORVU1Hr1G043520.14 , HORVU1Hr1G043520.17 , HORVU1Hr1G043520.16 , HORVU1Hr1G043520.11 , HORVU1Hr1G043520.10 , HORVU1Hr1G043520.13 , HORVU1Hr1G043520.12 , HORVU1Hr1G043520.19 , HORVU1Hr1G043520.18
Wheat TraesCS1D02G160000 , TraesCS1D02G160000 , TraesCS1D02G160000 , TraesCS1A02G163400 , TraesCS1A02G163400 , TraesCS1A02G163400 , TraesCS1B02G179900 , TraesCS1B02G179900 , TraesCS1B02G179900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
2 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
3 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
4 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
5 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
6 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
7 Sobic.010G115400 pentatricopeptide, putative, expressed -
8 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
9 Sobic.002G399800 PWWP domain containing protein, expressed -
10 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
11 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
12 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
13 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
14 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
15 Sobic.001G191700 expressed protein -
16 Sobic.001G214600 expressed protein -
17 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
18 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.003G059400 HEAT repeat family protein, putative, expressed K14550: UTP10, U3 small nucleolar RNA-associated protein 10
20 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1


Gene co-expression network
sample Sobic004G019200 Sobic004G019200 Sobic003G308500 Sobic003G308500 Sobic004G019200--Sobic003G308500 Sobic002G317200 Sobic002G317200 Sobic004G019200--Sobic002G317200 Sobic001G089600 Sobic001G089600 Sobic004G019200--Sobic001G089600 Sobic001G145400 Sobic001G145400 Sobic004G019200--Sobic001G145400 Sobic001G020000 Sobic001G020000 Sobic004G019200--Sobic001G020000 Sobic001G429600 Sobic001G429600 Sobic004G019200--Sobic001G429600 Sobic010G115400 Sobic010G115400 Sobic004G019200--Sobic010G115400 Sobic006G086600 Sobic006G086600 Sobic004G019200--Sobic006G086600 Sobic002G399800 Sobic002G399800 Sobic004G019200--Sobic002G399800 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic006G125500 Sobic006G125500 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic001G219600 Sobic001G219600 Sobic002G317200--Sobic001G219600 Sobic004G314000 Sobic004G314000 Sobic002G317200--Sobic004G314000 Sobic001G433800 Sobic001G433800 Sobic002G317200--Sobic001G433800 Sobic003G095900 Sobic003G095900 Sobic002G317200--Sobic003G095900 Sobic004G242400 Sobic004G242400 Sobic002G317200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic002G317200--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic002G317200--Sobic005G112300 Sobic009G260500 Sobic009G260500 Sobic002G317200--Sobic009G260500 Sobic001G089600--Sobic003G095900 Sobic001G089600--Sobic006G086600 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic001G020000--Sobic001G219600 Sobic001G020000--Sobic001G433800 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G087600 Sobic001G087600 Sobic001G020000--Sobic001G087600 Sobic002G425500 Sobic002G425500 Sobic001G020000--Sobic002G425500 Sobic001G020000--Sobic003G095900 Sobic001G352900 Sobic001G352900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300 Sobic003G199300 Sobic003G199300 Sobic001G429600--Sobic003G199300 Sobic002G372500 Sobic002G372500 Sobic001G429600--Sobic002G372500 Sobic009G101200 Sobic009G101200 Sobic001G429600--Sobic009G101200 Sobic009G211200 Sobic009G211200 Sobic001G429600--Sobic009G211200 Sobic001G429600--Sobic004G019200 Sobic006G125900 Sobic006G125900 Sobic001G429600--Sobic006G125900 Sobic006G193300 Sobic006G193300 Sobic001G429600--Sobic006G193300 Sobic001G052400 Sobic001G052400 Sobic001G429600--Sobic001G052400 Sobic010G174700 Sobic010G174700 Sobic001G429600--Sobic010G174700 Sobic010G115400--Sobic001G089600 Sobic010G115400--Sobic002G399800 Sobic010G102600 Sobic010G102600 Sobic010G115400--Sobic010G102600 Sobic010G115400--Sobic010G174700 Sobic001G393900 Sobic001G393900 Sobic010G115400--Sobic001G393900 Sobic010G115400--Sobic003G095900 Sobic010G115400--Sobic004G019200 Sobic003G260400 Sobic003G260400 Sobic010G115400--Sobic003G260400 Sobic003G032700 Sobic003G032700 Sobic010G115400--Sobic003G032700 Sobic010G003400 Sobic010G003400 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G086600--Sobic001G453400 Sobic004G320500 Sobic004G320500 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic006G086600--Sobic010G007100 Sobic002G399800--Sobic003G095900 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic002G399800--Sobic001G089600 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200
Octagon: transcription factors


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