Gene annotation
Transcriptome id Sobic.010G115400.2
Synonym Sb10g010013
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0VSI6
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF148
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G43980 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g32090.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a042676
Brachypodium -
Barley HORVU1Hr1G062240.5 , HORVU1Hr1G062240.4 , HORVU1Hr1G062240.7 , HORVU1Hr1G062240.6 , HORVU1Hr1G062240.1 , HORVU1Hr1G062240.3 , HORVU1Hr1G062240.2 , HORVU1Hr1G062240.9 , HORVU1Hr1G062240.8 , HORVU1Hr1G062240.11 , HORVU1Hr1G062240.10 , HORVU1Hr1G062240.13 , HORVU1Hr1G062240.12 , HORVU1Hr1G062240.15 , HORVU1Hr1G062240.14 , HORVU1Hr1G062240.17 , HORVU1Hr1G062240.16 , HORVU1Hr1G062240.19 , HORVU1Hr1G062240.18
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
2 Sobic.002G399800 PWWP domain containing protein, expressed -
3 Sobic.010G102600 pentatricopeptide, putative, expressed -
4 Sobic.010G174700 expressed protein -
5 Sobic.001G393900 FAD binding domain containing protein, expressed -
6 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
7 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
8 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
9 Sobic.003G032700 - -
10 Sobic.001G004400 - K14290: XPO1, exportin-1
11 Sobic.002G373950 - -
12 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
13 Sobic.007G071400 PPR repeat domain containing protein, putative, expressed -
14 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
15 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
16 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
17 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
18 Sobic.003G166750 - K15188: cyclin T
19 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
20 Sobic.003G445500 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1


Gene co-expression network
sample Sobic010G115400 Sobic010G115400 Sobic001G089600 Sobic001G089600 Sobic010G115400--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic010G115400--Sobic002G399800 Sobic010G102600 Sobic010G102600 Sobic010G115400--Sobic010G102600 Sobic010G174700 Sobic010G174700 Sobic010G115400--Sobic010G174700 Sobic001G393900 Sobic001G393900 Sobic010G115400--Sobic001G393900 Sobic003G095900 Sobic003G095900 Sobic010G115400--Sobic003G095900 Sobic004G019200 Sobic004G019200 Sobic010G115400--Sobic004G019200 Sobic003G260400 Sobic003G260400 Sobic010G115400--Sobic003G260400 Sobic003G032700 Sobic003G032700 Sobic010G115400--Sobic003G032700 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic002G399800--Sobic003G095900 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic002G399800--Sobic001G089600 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200 Sobic008G014801 Sobic008G014801 Sobic010G102600--Sobic008G014801 Sobic010G102600--Sobic001G089600 Sobic004G320500 Sobic004G320500 Sobic010G102600--Sobic004G320500 Sobic001G453400 Sobic001G453400 Sobic010G102600--Sobic001G453400 Sobic010G102600--Sobic001G493700 Sobic005G122700 Sobic005G122700 Sobic010G102600--Sobic005G122700 Sobic010G102600--Sobic010G115400 Sobic010G003400 Sobic010G003400 Sobic010G102600--Sobic010G003400 Sobic003G166750 Sobic003G166750 Sobic010G102600--Sobic003G166750 Sobic006G036100 Sobic006G036100 Sobic010G174700--Sobic006G036100 Sobic001G352900 Sobic001G352900 Sobic010G174700--Sobic001G352900 Sobic010G174700--Sobic001G089600 Sobic001G052400 Sobic001G052400 Sobic010G174700--Sobic001G052400 Sobic002G145800 Sobic002G145800 Sobic010G174700--Sobic002G145800 Sobic001G451300 Sobic001G451300 Sobic010G174700--Sobic001G451300 Sobic010G053600 Sobic010G053600 Sobic010G174700--Sobic010G053600 Sobic010G174700--Sobic001G453400 Sobic005G220000 Sobic005G220000 Sobic010G174700--Sobic005G220000 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G393900--Sobic001G089600 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic003G308500 Sobic003G308500 Sobic004G019200--Sobic003G308500 Sobic002G317200 Sobic002G317200 Sobic004G019200--Sobic002G317200 Sobic004G019200--Sobic001G089600 Sobic001G145400 Sobic001G145400 Sobic004G019200--Sobic001G145400 Sobic001G020000 Sobic001G020000 Sobic004G019200--Sobic001G020000 Sobic001G429600 Sobic001G429600 Sobic004G019200--Sobic001G429600 Sobic004G019200--Sobic010G115400 Sobic004G019200--Sobic006G086600 Sobic004G019200--Sobic002G399800 Sobic003G260400--Sobic010G079500 Sobic003G260400--Sobic003G095900 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic003G260400--Sobic002G316600 Sobic003G260400--Sobic010G003400 Sobic003G260400--Sobic001G089600 Sobic003G260400--Sobic001G453400 Sobic003G260400--Sobic001G393900 Sobic003G032700--Sobic001G089600 Sobic003G171500 Sobic003G171500 Sobic003G032700--Sobic003G171500 Sobic003G032700--Sobic003G166750 Sobic004G089000 Sobic004G089000 Sobic003G032700--Sobic004G089000 Sobic006G216100 Sobic006G216100 Sobic003G032700--Sobic006G216100 Sobic003G032700--Sobic010G115400 Sobic003G032700--Sobic010G102600 Sobic003G032700--Sobic003G095900 Sobic001G111850 Sobic001G111850 Sobic003G032700--Sobic001G111850
Octagon: transcription factors


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