Gene annotation
Transcriptome id Sobic.007G071400.1
Synonym Sb07g005650
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5YIF2
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF487
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26790 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g43080.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a054836 , Zm00025a025905
Brachypodium KQJ92119
Barley HORVU7Hr1G030860.1 , HORVU7Hr1G030860.2 , HORVU7Hr1G030860.3 , HORVU7Hr1G030860.4 , HORVU7Hr1G030860.5 , HORVU7Hr1G030860.6
Wheat TraesCS7D02G149900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
2 Sobic.010G115400 pentatricopeptide, putative, expressed -
3 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
4 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
5 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
6 Sobic.003G369400 expressed protein -
7 Sobic.010G174700 expressed protein -
8 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
9 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
10 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
11 Sobic.004G019500 pentatricopeptide, putative, expressed -
12 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
13 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
14 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
15 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
16 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
17 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
18 Sobic.001G178300 DNA-binding protein, putative, expressed -
19 Sobic.007G225000 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
20 Sobic.001G402500 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5


Gene co-expression network
sample Sobic007G071400 Sobic007G071400 Sobic007G171100 Sobic007G171100 Sobic007G071400--Sobic007G171100 Sobic010G115400 Sobic010G115400 Sobic007G071400--Sobic010G115400 Sobic004G019200 Sobic004G019200 Sobic007G071400--Sobic004G019200 Sobic001G089600 Sobic001G089600 Sobic007G071400--Sobic001G089600 Sobic010G051700 Sobic010G051700 Sobic007G071400--Sobic010G051700 Sobic003G369400 Sobic003G369400 Sobic007G071400--Sobic003G369400 Sobic010G174700 Sobic010G174700 Sobic007G071400--Sobic010G174700 Sobic002G133300 Sobic002G133300 Sobic007G071400--Sobic002G133300 Sobic001G352900 Sobic001G352900 Sobic007G071400--Sobic001G352900 Sobic007G171100--Sobic007G071400 Sobic010G053600 Sobic010G053600 Sobic007G171100--Sobic010G053600 Sobic007G171100--Sobic001G352900 Sobic002G043100 Sobic002G043100 Sobic007G171100--Sobic002G043100 Sobic008G017100 Sobic008G017100 Sobic007G171100--Sobic008G017100 Sobic007G171100--Sobic004G019200 Sobic007G171100--Sobic010G174700 Sobic001G020000 Sobic001G020000 Sobic007G171100--Sobic001G020000 Sobic006G036100 Sobic006G036100 Sobic007G171100--Sobic006G036100 Sobic010G115400--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic010G115400--Sobic002G399800 Sobic010G102600 Sobic010G102600 Sobic010G115400--Sobic010G102600 Sobic010G115400--Sobic010G174700 Sobic001G393900 Sobic001G393900 Sobic010G115400--Sobic001G393900 Sobic003G095900 Sobic003G095900 Sobic010G115400--Sobic003G095900 Sobic010G115400--Sobic004G019200 Sobic003G260400 Sobic003G260400 Sobic010G115400--Sobic003G260400 Sobic003G032700 Sobic003G032700 Sobic010G115400--Sobic003G032700 Sobic003G308500 Sobic003G308500 Sobic004G019200--Sobic003G308500 Sobic002G317200 Sobic002G317200 Sobic004G019200--Sobic002G317200 Sobic004G019200--Sobic001G089600 Sobic001G145400 Sobic001G145400 Sobic004G019200--Sobic001G145400 Sobic004G019200--Sobic001G020000 Sobic001G429600 Sobic001G429600 Sobic004G019200--Sobic001G429600 Sobic004G019200--Sobic010G115400 Sobic006G086600 Sobic006G086600 Sobic004G019200--Sobic006G086600 Sobic004G019200--Sobic002G399800 Sobic001G089600--Sobic003G095900 Sobic001G089600--Sobic006G086600 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic003G033100 Sobic003G033100 Sobic010G051700--Sobic003G033100 Sobic004G025800 Sobic004G025800 Sobic010G051700--Sobic004G025800 Sobic006G128400 Sobic006G128400 Sobic010G051700--Sobic006G128400 Sobic003G434700 Sobic003G434700 Sobic010G051700--Sobic003G434700 Sobic010G051700--Sobic010G115400 Sobic001G172700 Sobic001G172700 Sobic010G051700--Sobic001G172700 Sobic010G051700--Sobic003G032700 Sobic003G171500 Sobic003G171500 Sobic010G051700--Sobic003G171500 Sobic010G051700--Sobic004G019200 Sobic001G194200 Sobic001G194200 Sobic003G369400--Sobic001G194200 Sobic004G263600 Sobic004G263600 Sobic003G369400--Sobic004G263600 Sobic004G291900 Sobic004G291900 Sobic003G369400--Sobic004G291900 Sobic007G103100 Sobic007G103100 Sobic003G369400--Sobic007G103100 Sobic003G067100 Sobic003G067100 Sobic003G369400--Sobic003G067100 Sobic001G289800 Sobic001G289800 Sobic003G369400--Sobic001G289800 Sobic003G355900 Sobic003G355900 Sobic003G369400--Sobic003G355900 Sobic004G238900 Sobic004G238900 Sobic003G369400--Sobic004G238900 Sobic001G002000 Sobic001G002000 Sobic003G369400--Sobic001G002000 Sobic010G174700--Sobic006G036100 Sobic010G174700--Sobic001G352900 Sobic010G174700--Sobic001G089600 Sobic001G052400 Sobic001G052400 Sobic010G174700--Sobic001G052400 Sobic002G145800 Sobic002G145800 Sobic010G174700--Sobic002G145800 Sobic001G451300 Sobic001G451300 Sobic010G174700--Sobic001G451300 Sobic010G174700--Sobic010G053600 Sobic001G453400 Sobic001G453400 Sobic010G174700--Sobic001G453400 Sobic005G220000 Sobic005G220000 Sobic010G174700--Sobic005G220000 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic004G242400 Sobic004G242400 Sobic001G352900--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic001G352900--Sobic010G001100 Sobic009G109200 Sobic009G109200 Sobic001G352900--Sobic009G109200 Sobic001G352900--Sobic002G317200 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic003G293200 Sobic003G293200 Sobic001G352900--Sobic003G293200
Octagon: transcription factors


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