Gene annotation
Transcriptome id Sobic.010G051700.1
Synonym Sb10g004493
Functional annotation DNA topoisomerase I family protein, expressed
UniProt C5Z4W2
Pfam PF01396 PF13368 PF01751 PF01131
Panther DB PTHR11390 PTHR11390:SF27
NCBI CDD KOG1956; DNA topoisomerase III alpha
KEGG Orthology -
Gene Ontology GO:0006265; DNA topological change GO:0005694chromosome GO:0003916DNA topoisomerase activity GO:0003677DNA binding GO:0003917DNA topoisomerase type I (single strand cut, ATP-independent) activity


Orthologs (automatic annotation)
TAIR AT4G31210 : DNA topoisomerase, type IA, core
RAP-DB (Rice) LOC_Os06g16980.1 : DNA topoisomerase I family protein, expressed
MaizeGDB (Corn) Zm00025a050476 , Zm00025a042741
Brachypodium KQK18609
Barley HORVU7Hr1G065200.18 , HORVU7Hr1G065200.2 , HORVU7Hr1G065200.3 , HORVU7Hr1G065200.1 , HORVU7Hr1G065200.6 , HORVU7Hr1G065200.7 , HORVU7Hr1G065200.4 , HORVU7Hr1G065200.5 , HORVU7Hr1G065200.8 , HORVU7Hr1G065200.9 , HORVU7Hr1G065200.13 , HORVU7Hr1G065200.14 , HORVU7Hr1G065200.15 , HORVU7Hr1G065200.16 , HORVU7Hr1G065200.17 , HORVU7Hr1G065200.19 , HORVU7Hr1G065200.10 , HORVU7Hr1G065200.11 , HORVU7Hr1G065200.12
Wheat TraesCS1B02G181400 , TraesCS7B02G119300 , TraesCS7B02G119300 , TraesCS7B02G119300 , TraesCS7B02G119300 , TraesCS7A02G212500 , TraesCS1D02G161700 , TraesCS7D02G214300 , TraesCS7D02G214300 , TraesCS7D02G214300 , TraesCS7D02G214300 , TraesCS7D02G214300 , TraesCS7B02G119300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G033100 RNA methyltransferase protein, putative, expressed -
2 Sobic.004G025800 phosphoribosyl transferase, putative, expressed K00948: PRPS, ribose-phosphate pyrophosphokinase
3 Sobic.006G128400 PPR repeat containing protein, expressed -
4 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
5 Sobic.010G115400 pentatricopeptide, putative, expressed -
6 Sobic.001G172700 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
7 Sobic.003G032700 - -
8 Sobic.003G171500 dnaJ domain containing protein, expressed -
9 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
10 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
11 Sobic.004G030800 expressed protein -
12 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
13 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
14 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
15 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
16 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
17 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
18 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
19 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
20 Sobic.003G039300 expressed protein -


Gene co-expression network
sample Sobic010G051700 Sobic010G051700 Sobic003G033100 Sobic003G033100 Sobic010G051700--Sobic003G033100 Sobic004G025800 Sobic004G025800 Sobic010G051700--Sobic004G025800 Sobic006G128400 Sobic006G128400 Sobic010G051700--Sobic006G128400 Sobic003G434700 Sobic003G434700 Sobic010G051700--Sobic003G434700 Sobic010G115400 Sobic010G115400 Sobic010G051700--Sobic010G115400 Sobic001G172700 Sobic001G172700 Sobic010G051700--Sobic001G172700 Sobic003G032700 Sobic003G032700 Sobic010G051700--Sobic003G032700 Sobic003G171500 Sobic003G171500 Sobic010G051700--Sobic003G171500 Sobic004G019200 Sobic004G019200 Sobic010G051700--Sobic004G019200 Sobic002G043600 Sobic002G043600 Sobic003G033100--Sobic002G043600 Sobic005G084500 Sobic005G084500 Sobic003G033100--Sobic005G084500 Sobic003G033100--Sobic004G025800 Sobic003G033100--Sobic010G051700 Sobic002G181000 Sobic002G181000 Sobic003G033100--Sobic002G181000 Sobic007G005400 Sobic007G005400 Sobic003G033100--Sobic007G005400 Sobic003G234900 Sobic003G234900 Sobic003G033100--Sobic003G234900 Sobic005G142800 Sobic005G142800 Sobic003G033100--Sobic005G142800 Sobic006G049900 Sobic006G049900 Sobic003G033100--Sobic006G049900 Sobic003G391400 Sobic003G391400 Sobic004G025800--Sobic003G391400 Sobic007G075800 Sobic007G075800 Sobic004G025800--Sobic007G075800 Sobic004G025800--Sobic003G033100 Sobic004G030800 Sobic004G030800 Sobic004G025800--Sobic004G030800 Sobic004G025800--Sobic010G051700 Sobic004G025800--Sobic001G172700 Sobic003G101700 Sobic003G101700 Sobic004G025800--Sobic003G101700 Sobic002G418600 Sobic002G418600 Sobic004G025800--Sobic002G418600 Sobic004G025800--Sobic005G142800 Sobic002G378100 Sobic002G378100 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic002G092050 Sobic002G092050 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic006G128400--Sobic008G165900 Sobic006G128400--Sobic007G075800 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic001G022500 Sobic001G022500 Sobic003G434700--Sobic001G022500 Sobic003G067100 Sobic003G067100 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G162800 Sobic003G162800 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic004G225600 Sobic004G225600 Sobic003G434700--Sobic004G225600 Sobic001G375000 Sobic001G375000 Sobic003G434700--Sobic001G375000 Sobic003G434700--Sobic003G234900 Sobic001G089600 Sobic001G089600 Sobic010G115400--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic010G115400--Sobic002G399800 Sobic010G102600 Sobic010G102600 Sobic010G115400--Sobic010G102600 Sobic010G174700 Sobic010G174700 Sobic010G115400--Sobic010G174700 Sobic001G393900 Sobic001G393900 Sobic010G115400--Sobic001G393900 Sobic003G095900 Sobic003G095900 Sobic010G115400--Sobic003G095900 Sobic010G115400--Sobic004G019200 Sobic003G260400 Sobic003G260400 Sobic010G115400--Sobic003G260400 Sobic010G115400--Sobic003G032700 Sobic004G134200 Sobic004G134200 Sobic001G172700--Sobic004G134200 Sobic009G215500 Sobic009G215500 Sobic001G172700--Sobic009G215500 Sobic001G172700--Sobic004G025800 Sobic006G137600 Sobic006G137600 Sobic001G172700--Sobic006G137600 Sobic001G172700--Sobic003G434700 Sobic010G053600 Sobic010G053600 Sobic001G172700--Sobic010G053600 Sobic008G044100 Sobic008G044100 Sobic001G172700--Sobic008G044100 Sobic001G172700--Sobic005G142800 Sobic001G172700--Sobic010G051700 Sobic003G032700--Sobic001G089600 Sobic003G032700--Sobic003G171500 Sobic003G166750 Sobic003G166750 Sobic003G032700--Sobic003G166750 Sobic004G089000 Sobic004G089000 Sobic003G032700--Sobic004G089000 Sobic006G216100 Sobic006G216100 Sobic003G032700--Sobic006G216100 Sobic003G032700--Sobic010G115400 Sobic003G032700--Sobic010G102600 Sobic003G032700--Sobic003G095900 Sobic001G111850 Sobic001G111850 Sobic003G032700--Sobic001G111850 Sobic006G055200 Sobic006G055200 Sobic003G171500--Sobic006G055200 Sobic006G086600 Sobic006G086600 Sobic003G171500--Sobic006G086600 Sobic007G207200 Sobic007G207200 Sobic003G171500--Sobic007G207200 Sobic002G317200 Sobic002G317200 Sobic003G171500--Sobic002G317200 Sobic005G160100 Sobic005G160100 Sobic003G171500--Sobic005G160100 Sobic007G220300 Sobic007G220300 Sobic003G171500--Sobic007G220300 Sobic003G171500--Sobic003G032700 Sobic001G020000 Sobic001G020000 Sobic003G171500--Sobic001G020000 Sobic004G131300 Sobic004G131300 Sobic003G171500--Sobic004G131300 Sobic003G308500 Sobic003G308500 Sobic004G019200--Sobic003G308500 Sobic004G019200--Sobic002G317200 Sobic004G019200--Sobic001G089600 Sobic001G145400 Sobic001G145400 Sobic004G019200--Sobic001G145400 Sobic004G019200--Sobic001G020000 Sobic001G429600 Sobic001G429600 Sobic004G019200--Sobic001G429600 Sobic004G019200--Sobic010G115400 Sobic004G019200--Sobic006G086600 Sobic004G019200--Sobic002G399800
Octagon: transcription factors


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