Gene annotation
Transcriptome id Sobic.004G025800.1
Synonym Sb04g002280
Functional annotation phosphoribosyl transferase, putative, expressed
UniProt C5XTQ8
Pfam PF14572 PF13793
Panther DB PTHR10210 PTHR10210:SF56
NCBI CDD KOG1448; Ribose-phosphate pyrophosphokinase
KEGG Orthology K00948; PRPS, ribose-phosphate pyrophosphokinase
Gene Ontology GO:0009165; nucleotide biosynthetic process GO:0004749ribose phosphate diphosphokinase activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT2G44530 : Phosphoribosyltransferase family protein
RAP-DB (Rice) LOC_Os02g03540.1 : phosphoribosyl transferase, putative, expressed
MaizeGDB (Corn) Zm00025a018821
Brachypodium KQJ93085
Barley HORVU6Hr1G015080.14 , HORVU6Hr1G015080.10 , HORVU6Hr1G015080.11 , HORVU6Hr1G015080.12 , HORVU6Hr1G015080.13 , HORVU6Hr1G015080.7 , HORVU6Hr1G015080.5 , HORVU6Hr1G015080.2 , HORVU6Hr1G015080.8 , HORVU6Hr1G015080.9 , HORVU6Hr1G015080.6 , HORVU6Hr1G015080.4 , HORVU6Hr1G015080.3
Wheat TraesCS6B02G110600 , TraesCSU02G018200 , TraesCS6A02G088200 , TraesCS6A02G088200
Populus -


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cDNA sequences
Sobic.004G025800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G391400 recA protein, putative, expressed K03553: recombination protein RecA
2 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
3 Sobic.003G033100 RNA methyltransferase protein, putative, expressed -
4 Sobic.004G030800 expressed protein -
5 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
6 Sobic.001G172700 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
7 Sobic.003G101700 dnaJ domain containing protein, expressed -
8 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH
9 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
10 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
11 Sobic.010G100516 - -
12 Sobic.003G190000 PPR repeat domain containing protein, putative, expressed -
13 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
14 Sobic.004G134200 GTP binding protein, putative, expressed -
15 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
16 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
17 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
18 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
19 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
20 Sobic.001G060500 YT521-B, putative, expressed -


Gene co-expression network
sample Sobic004G025800 Sobic004G025800 Sobic003G391400 Sobic003G391400 Sobic004G025800--Sobic003G391400 Sobic007G075800 Sobic007G075800 Sobic004G025800--Sobic007G075800 Sobic003G033100 Sobic003G033100 Sobic004G025800--Sobic003G033100 Sobic004G030800 Sobic004G030800 Sobic004G025800--Sobic004G030800 Sobic010G051700 Sobic010G051700 Sobic004G025800--Sobic010G051700 Sobic001G172700 Sobic001G172700 Sobic004G025800--Sobic001G172700 Sobic003G101700 Sobic003G101700 Sobic004G025800--Sobic003G101700 Sobic002G418600 Sobic002G418600 Sobic004G025800--Sobic002G418600 Sobic005G142800 Sobic005G142800 Sobic004G025800--Sobic005G142800 Sobic003G391400--Sobic004G025800 Sobic003G391400--Sobic003G101700 Sobic003G391400--Sobic001G172700 Sobic003G391400--Sobic004G030800 Sobic001G072500 Sobic001G072500 Sobic003G391400--Sobic001G072500 Sobic002G316600 Sobic002G316600 Sobic003G391400--Sobic002G316600 Sobic002G197300 Sobic002G197300 Sobic003G391400--Sobic002G197300 Sobic009G215500 Sobic009G215500 Sobic003G391400--Sobic009G215500 Sobic004G134200 Sobic004G134200 Sobic003G391400--Sobic004G134200 Sobic002G031700 Sobic002G031700 Sobic007G075800--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic007G075800--Sobic002G155000 Sobic007G075800--Sobic004G025800 Sobic007G075800--Sobic004G030800 Sobic008G165900 Sobic008G165900 Sobic007G075800--Sobic008G165900 Sobic006G128400 Sobic006G128400 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic002G043600 Sobic002G043600 Sobic003G033100--Sobic002G043600 Sobic005G084500 Sobic005G084500 Sobic003G033100--Sobic005G084500 Sobic003G033100--Sobic004G025800 Sobic003G033100--Sobic010G051700 Sobic002G181000 Sobic002G181000 Sobic003G033100--Sobic002G181000 Sobic007G005400 Sobic007G005400 Sobic003G033100--Sobic007G005400 Sobic003G234900 Sobic003G234900 Sobic003G033100--Sobic003G234900 Sobic003G033100--Sobic005G142800 Sobic003G033100--Sobic006G049900 Sobic010G003400 Sobic010G003400 Sobic004G030800--Sobic010G003400 Sobic001G052400 Sobic001G052400 Sobic004G030800--Sobic001G052400 Sobic004G030800--Sobic004G025800 Sobic004G030800--Sobic008G051200 Sobic004G030800--Sobic007G075800 Sobic003G260400 Sobic003G260400 Sobic004G030800--Sobic003G260400 Sobic009G101200 Sobic009G101200 Sobic004G030800--Sobic009G101200 Sobic010G053600 Sobic010G053600 Sobic004G030800--Sobic010G053600 Sobic001G004400 Sobic001G004400 Sobic004G030800--Sobic001G004400 Sobic010G051700--Sobic003G033100 Sobic010G051700--Sobic004G025800 Sobic010G051700--Sobic006G128400 Sobic003G434700 Sobic003G434700 Sobic010G051700--Sobic003G434700 Sobic010G115400 Sobic010G115400 Sobic010G051700--Sobic010G115400 Sobic010G051700--Sobic001G172700 Sobic003G032700 Sobic003G032700 Sobic010G051700--Sobic003G032700 Sobic003G171500 Sobic003G171500 Sobic010G051700--Sobic003G171500 Sobic004G019200 Sobic004G019200 Sobic010G051700--Sobic004G019200 Sobic001G172700--Sobic004G134200 Sobic001G172700--Sobic009G215500 Sobic001G172700--Sobic004G025800 Sobic006G137600 Sobic006G137600 Sobic001G172700--Sobic006G137600 Sobic001G172700--Sobic003G434700 Sobic001G172700--Sobic010G053600 Sobic008G044100 Sobic008G044100 Sobic001G172700--Sobic008G044100 Sobic001G172700--Sobic005G142800 Sobic001G172700--Sobic010G051700 Sobic003G101700--Sobic002G316600 Sobic010G079500 Sobic010G079500 Sobic003G101700--Sobic010G079500 Sobic002G308700 Sobic002G308700 Sobic003G101700--Sobic002G308700 Sobic003G101700--Sobic003G260400 Sobic001G298900 Sobic001G298900 Sobic003G101700--Sobic001G298900 Sobic001G230000 Sobic001G230000 Sobic003G101700--Sobic001G230000 Sobic008G054000 Sobic008G054000 Sobic003G101700--Sobic008G054000 Sobic003G101700--Sobic004G134200 Sobic004G334300 Sobic004G334300 Sobic003G101700--Sobic004G334300 Sobic002G418600--Sobic002G181000 Sobic002G073200 Sobic002G073200 Sobic002G418600--Sobic002G073200 Sobic006G233700 Sobic006G233700 Sobic002G418600--Sobic006G233700 Sobic002G418600--Sobic005G142800 Sobic004G333400 Sobic004G333400 Sobic002G418600--Sobic004G333400 Sobic004G165000 Sobic004G165000 Sobic002G418600--Sobic004G165000 Sobic001G500600 Sobic001G500600 Sobic002G418600--Sobic001G500600 Sobic003G334100 Sobic003G334100 Sobic002G418600--Sobic003G334100 Sobic009G014100 Sobic009G014100 Sobic002G418600--Sobic009G014100 Sobic006G119400 Sobic006G119400 Sobic005G142800--Sobic006G119400 Sobic005G142800--Sobic001G298900 Sobic001G124100 Sobic001G124100 Sobic005G142800--Sobic001G124100 Sobic005G142800--Sobic004G134200 Sobic008G172300 Sobic008G172300 Sobic005G142800--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic005G142800--Sobic002G345700 Sobic005G142800--Sobic002G418600 Sobic005G142800--Sobic010G079500 Sobic007G111400 Sobic007G111400 Sobic005G142800--Sobic007G111400
Octagon: transcription factors


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