Gene annotation
Transcriptome id Sobic.003G391400.1
Synonym Sb03g042890
Functional annotation recA protein, putative, expressed
UniProt C5XFF2
Pfam PF00154
Panther DB PTHR22942:SF1 PTHR22942
NCBI CDD KOG1433; DNA repair protein RAD51/RHP55
KEGG Orthology K03553; recombination protein RecA
Gene Ontology GO:0003697; single-stranded DNA binding GO:0005524ATP binding GO:0006281DNA repair GO:0009432SOS response


Orthologs (automatic annotation)
TAIR AT2G19490 : recA DNA recombination family protein
RAP-DB (Rice) LOC_Os01g67510.1 : recA protein, putative, expressed
MaizeGDB (Corn) Zm00025a039441 , Zm00025a026399
Brachypodium -
Barley -
Wheat TraesCS3B02G426500 , TraesCS3D02G388300 , TraesCS3A02G394500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G025800 phosphoribosyl transferase, putative, expressed K00948: PRPS, ribose-phosphate pyrophosphokinase
2 Sobic.003G101700 dnaJ domain containing protein, expressed -
3 Sobic.001G172700 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
4 Sobic.004G030800 expressed protein -
5 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
6 Sobic.002G316600 expressed protein -
7 Sobic.002G197300 MSH-like DNA mismatch repair protein, putative, expressed K08737: DNA mismatch repair protein MSH6
8 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
9 Sobic.004G134200 GTP binding protein, putative, expressed -
10 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
11 Sobic.007G192600 FACT complex subunit SPT16, putative, expressed -
12 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
13 Sobic.005G122700 PPR repeat domain containing protein, putative, expressed -
14 Sobic.002G029900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.010G143800 expressed protein -
16 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
17 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
18 Sobic.008G016300 expressed protein -
19 Sobic.002G425700 ribonucleases P/MRP protein subunit POP1 containing protein, expressed K01164: ribonuclease P/MRP protein subunit POP1
20 Sobic.010G100516 - -


Gene co-expression network
sample Sobic003G391400 Sobic003G391400 Sobic004G025800 Sobic004G025800 Sobic003G391400--Sobic004G025800 Sobic003G101700 Sobic003G101700 Sobic003G391400--Sobic003G101700 Sobic001G172700 Sobic001G172700 Sobic003G391400--Sobic001G172700 Sobic004G030800 Sobic004G030800 Sobic003G391400--Sobic004G030800 Sobic001G072500 Sobic001G072500 Sobic003G391400--Sobic001G072500 Sobic002G316600 Sobic002G316600 Sobic003G391400--Sobic002G316600 Sobic002G197300 Sobic002G197300 Sobic003G391400--Sobic002G197300 Sobic009G215500 Sobic009G215500 Sobic003G391400--Sobic009G215500 Sobic004G134200 Sobic004G134200 Sobic003G391400--Sobic004G134200 Sobic004G025800--Sobic003G391400 Sobic007G075800 Sobic007G075800 Sobic004G025800--Sobic007G075800 Sobic003G033100 Sobic003G033100 Sobic004G025800--Sobic003G033100 Sobic004G025800--Sobic004G030800 Sobic010G051700 Sobic010G051700 Sobic004G025800--Sobic010G051700 Sobic004G025800--Sobic001G172700 Sobic004G025800--Sobic003G101700 Sobic002G418600 Sobic002G418600 Sobic004G025800--Sobic002G418600 Sobic005G142800 Sobic005G142800 Sobic004G025800--Sobic005G142800 Sobic003G101700--Sobic002G316600 Sobic010G079500 Sobic010G079500 Sobic003G101700--Sobic010G079500 Sobic002G308700 Sobic002G308700 Sobic003G101700--Sobic002G308700 Sobic003G260400 Sobic003G260400 Sobic003G101700--Sobic003G260400 Sobic001G298900 Sobic001G298900 Sobic003G101700--Sobic001G298900 Sobic001G230000 Sobic001G230000 Sobic003G101700--Sobic001G230000 Sobic008G054000 Sobic008G054000 Sobic003G101700--Sobic008G054000 Sobic003G101700--Sobic004G134200 Sobic004G334300 Sobic004G334300 Sobic003G101700--Sobic004G334300 Sobic001G172700--Sobic004G134200 Sobic001G172700--Sobic009G215500 Sobic001G172700--Sobic004G025800 Sobic006G137600 Sobic006G137600 Sobic001G172700--Sobic006G137600 Sobic003G434700 Sobic003G434700 Sobic001G172700--Sobic003G434700 Sobic010G053600 Sobic010G053600 Sobic001G172700--Sobic010G053600 Sobic008G044100 Sobic008G044100 Sobic001G172700--Sobic008G044100 Sobic001G172700--Sobic005G142800 Sobic001G172700--Sobic010G051700 Sobic010G003400 Sobic010G003400 Sobic004G030800--Sobic010G003400 Sobic001G052400 Sobic001G052400 Sobic004G030800--Sobic001G052400 Sobic004G030800--Sobic004G025800 Sobic008G051200 Sobic008G051200 Sobic004G030800--Sobic008G051200 Sobic004G030800--Sobic007G075800 Sobic004G030800--Sobic003G260400 Sobic009G101200 Sobic009G101200 Sobic004G030800--Sobic009G101200 Sobic004G030800--Sobic010G053600 Sobic001G004400 Sobic001G004400 Sobic004G030800--Sobic001G004400 Sobic002G169633 Sobic002G169633 Sobic001G072500--Sobic002G169633 Sobic003G401600 Sobic003G401600 Sobic001G072500--Sobic003G401600 Sobic004G263600 Sobic004G263600 Sobic001G072500--Sobic004G263600 Sobic004G209600 Sobic004G209600 Sobic001G072500--Sobic004G209600 Sobic001G072500--Sobic002G316600 Sobic004G314000 Sobic004G314000 Sobic001G072500--Sobic004G314000 Sobic006G131500 Sobic006G131500 Sobic001G072500--Sobic006G131500 Sobic010G206900 Sobic010G206900 Sobic001G072500--Sobic010G206900 Sobic010G139000 Sobic010G139000 Sobic001G072500--Sobic010G139000 Sobic007G103100 Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic002G316600--Sobic001G527800 Sobic003G186000 Sobic003G186000 Sobic002G316600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic002G316600--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic002G316600--Sobic001G289800 Sobic002G316600--Sobic010G079500 Sobic002G431400 Sobic002G431400 Sobic002G197300--Sobic002G431400 Sobic002G031400 Sobic002G031400 Sobic002G197300--Sobic002G031400 Sobic004G107200 Sobic004G107200 Sobic002G197300--Sobic004G107200 Sobic002G197300--Sobic003G391400 Sobic003G106200 Sobic003G106200 Sobic002G197300--Sobic003G106200 Sobic007G161000 Sobic007G161000 Sobic002G197300--Sobic007G161000 Sobic002G197300--Sobic001G172700 Sobic003G101500 Sobic003G101500 Sobic002G197300--Sobic003G101500 Sobic002G296100 Sobic002G296100 Sobic002G197300--Sobic002G296100 Sobic001G530900 Sobic001G530900 Sobic009G215500--Sobic001G530900 Sobic009G215500--Sobic008G044100 Sobic009G215500--Sobic004G134200 Sobic003G155100 Sobic003G155100 Sobic009G215500--Sobic003G155100 Sobic006G031800 Sobic006G031800 Sobic009G215500--Sobic006G031800 Sobic006G219600 Sobic006G219600 Sobic009G215500--Sobic006G219600 Sobic001G133000 Sobic001G133000 Sobic009G215500--Sobic001G133000 Sobic001G465700 Sobic001G465700 Sobic009G215500--Sobic001G465700 Sobic006G050700 Sobic006G050700 Sobic009G215500--Sobic006G050700 Sobic004G134200--Sobic008G044100 Sobic001G374100 Sobic001G374100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic004G134200--Sobic010G010700 Sobic004G134200--Sobic009G215500 Sobic004G134200--Sobic001G194200 Sobic004G134200--Sobic004G276400 Sobic003G011300 Sobic003G011300 Sobic004G134200--Sobic003G011300 Sobic004G134200--Sobic001G172700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.