Gene annotation
Transcriptome id Sobic.007G192600.2,Sobic.007G192600.6,Sobic.007G192600.5,Sobic.007G192600.1
Synonym SPT16, Sb07g026150
Functional annotation FACT complex subunit SPT16, putative, expressed
UniProt A0A1B6PIS6 , A0A1B6PIL6 , A0A1Z5RAM2
Pfam PF00557 PF08644 PF08512 PF00557 PF14826 PF08644 PF00557 PF14826 PF08644
Panther DB PTHR13980
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G10710 : global transcription factor C
RAP-DB (Rice) LOC_Os04g25550.1 : FACT complex subunit SPT16, putative, expressed
MaizeGDB (Corn) Zm00025a018715
Brachypodium KQK21282 , KQK21283 , KQK21280
Barley HORVU2Hr1G010380.11 , HORVU2Hr1G010380.10 , HORVU2Hr1G010380.2 , HORVU2Hr1G010380.3 , HORVU2Hr1G010380.1 , HORVU2Hr1G010380.6 , HORVU2Hr1G010380.7 , HORVU2Hr1G010380.4 , HORVU2Hr1G010380.5 , HORVU2Hr1G010380.8 , HORVU2Hr1G010380.9
Wheat TraesCS2A02G017400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
2 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
3 Sobic.009G003300 expressed protein -
4 Sobic.001G374100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
5 Sobic.001G530900 expressed protein -
6 Sobic.006G234601 - -
7 Sobic.008G044100 expressed protein -
8 Sobic.001G519900 ribonuclease protein, putative, expressed K12585: DIS3, exosome complex exonuclease DIS3/RRP44
9 Sobic.004G134200 GTP binding protein, putative, expressed -
10 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -
11 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
12 Sobic.010G125500 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
13 Sobic.010G100516 - -
14 Sobic.002G033300 expressed protein -
15 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
16 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
17 Sobic.003G247500 expressed protein -
18 Sobic.008G166400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NBS-LRR disease resistance protein, putative, expressed -
19 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
20 Sobic.003G391400 recA protein, putative, expressed K03553: recombination protein RecA


Gene co-expression network
sample Sobic007G192600 Sobic007G192600 Sobic002G124600 Sobic002G124600 Sobic007G192600--Sobic002G124600 Sobic004G263600 Sobic004G263600 Sobic007G192600--Sobic004G263600 Sobic009G003300 Sobic009G003300 Sobic007G192600--Sobic009G003300 Sobic001G374100 Sobic001G374100 Sobic007G192600--Sobic001G374100 Sobic001G530900 Sobic001G530900 Sobic007G192600--Sobic001G530900 Sobic006G234601 Sobic006G234601 Sobic007G192600--Sobic006G234601 Sobic008G044100 Sobic008G044100 Sobic007G192600--Sobic008G044100 Sobic001G519900 Sobic001G519900 Sobic007G192600--Sobic001G519900 Sobic004G134200 Sobic004G134200 Sobic007G192600--Sobic004G134200 Sobic006G219600 Sobic006G219600 Sobic002G124600--Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic002G124600--Sobic003G155100 Sobic001G375100 Sobic001G375100 Sobic002G124600--Sobic001G375100 Sobic006G133900 Sobic006G133900 Sobic002G124600--Sobic006G133900 Sobic008G001200 Sobic008G001200 Sobic002G124600--Sobic008G001200 Sobic001G298900 Sobic001G298900 Sobic002G124600--Sobic001G298900 Sobic008G130100 Sobic008G130100 Sobic002G124600--Sobic008G130100 Sobic004G174200 Sobic004G174200 Sobic002G124600--Sobic004G174200 Sobic004G356700 Sobic004G356700 Sobic002G124600--Sobic004G356700 Sobic007G193700 Sobic007G193700 Sobic004G263600--Sobic007G193700 Sobic004G263600--Sobic004G174200 Sobic001G194200 Sobic001G194200 Sobic004G263600--Sobic001G194200 Sobic006G055200 Sobic006G055200 Sobic004G263600--Sobic006G055200 Sobic004G291900 Sobic004G291900 Sobic004G263600--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic004G263600--Sobic005G001000 Sobic004G263600--Sobic008G001200 Sobic001G072500 Sobic001G072500 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000 Sobic009G003300--Sobic007G192600 Sobic005G110300 Sobic005G110300 Sobic009G003300--Sobic005G110300 Sobic009G003300--Sobic002G124600 Sobic003G041100 Sobic003G041100 Sobic009G003300--Sobic003G041100 Sobic005G110200 Sobic005G110200 Sobic009G003300--Sobic005G110200 Sobic009G003300--Sobic001G375100 Sobic009G003300--Sobic004G263600 Sobic009G191000 Sobic009G191000 Sobic009G003300--Sobic009G191000 Sobic009G003300--Sobic007G193700 Sobic001G374100--Sobic008G044100 Sobic001G374100--Sobic004G134200 Sobic010G010700 Sobic010G010700 Sobic001G374100--Sobic010G010700 Sobic001G374100--Sobic003G155100 Sobic006G252900 Sobic006G252900 Sobic001G374100--Sobic006G252900 Sobic003G011300 Sobic003G011300 Sobic001G374100--Sobic003G011300 Sobic001G374100--Sobic008G001200 Sobic006G259800 Sobic006G259800 Sobic001G374100--Sobic006G259800 Sobic001G456900 Sobic001G456900 Sobic001G374100--Sobic001G456900 Sobic010G002700 Sobic010G002700 Sobic001G530900--Sobic010G002700 Sobic009G215500 Sobic009G215500 Sobic001G530900--Sobic009G215500 Sobic001G378100 Sobic001G378100 Sobic001G530900--Sobic001G378100 Sobic007G185700 Sobic007G185700 Sobic001G530900--Sobic007G185700 Sobic005G118400 Sobic005G118400 Sobic001G530900--Sobic005G118400 Sobic005G084500 Sobic005G084500 Sobic001G530900--Sobic005G084500 Sobic003G332700 Sobic003G332700 Sobic001G530900--Sobic003G332700 Sobic001G465700 Sobic001G465700 Sobic001G530900--Sobic001G465700 Sobic003G217700 Sobic003G217700 Sobic001G530900--Sobic003G217700 Sobic007G111400 Sobic007G111400 Sobic006G234601--Sobic007G111400 Sobic006G234601--Sobic002G124600 Sobic003G057233 Sobic003G057233 Sobic006G234601--Sobic003G057233 Sobic002G379750 Sobic002G379750 Sobic006G234601--Sobic002G379750 Sobic006G050700 Sobic006G050700 Sobic006G234601--Sobic006G050700 Sobic006G234601--Sobic003G155100 Sobic006G234601--Sobic006G133900 Sobic001G534700 Sobic001G534700 Sobic006G234601--Sobic001G534700 Sobic010G132600 Sobic010G132600 Sobic006G234601--Sobic010G132600 Sobic008G044100--Sobic010G010700 Sobic008G044100--Sobic004G134200 Sobic008G044100--Sobic001G374100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic001G373900 Sobic001G373900 Sobic001G519900--Sobic001G373900 Sobic004G334300 Sobic004G334300 Sobic001G519900--Sobic004G334300 Sobic002G308700 Sobic002G308700 Sobic001G519900--Sobic002G308700 Sobic003G186000 Sobic003G186000 Sobic001G519900--Sobic003G186000 Sobic005G162500 Sobic005G162500 Sobic001G519900--Sobic005G162500 Sobic001G519900--Sobic004G356700 Sobic001G519900--Sobic001G375100 Sobic001G192000 Sobic001G192000 Sobic001G519900--Sobic001G192000 Sobic001G519900--Sobic006G259800 Sobic004G134200--Sobic008G044100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic004G134200--Sobic010G010700 Sobic004G134200--Sobic009G215500 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700
Octagon: transcription factors


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