Gene annotation
Transcriptome id Sobic.002G033300.1
Synonym Sb02g002890
Functional annotation expressed protein
UniProt A0A1W0W213
Pfam -
Panther DB PTHR33883 PTHR33883:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34730 : myosin heavy chain-related
RAP-DB (Rice) LOC_Os07g05390.1 : expressed protein
MaizeGDB (Corn) Zm00025a055820
Brachypodium KQK21039
Barley HORVU2Hr1G038860.1 , HORVU2Hr1G038860.3 , HORVU2Hr1G038860.2 , HORVU2Hr1G038860.5 , HORVU2Hr1G038860.4 , HORVU2Hr1G038860.7 , HORVU2Hr1G038860.6
Wheat TraesCS5D02G430700 , TraesCS2B02G272600 , TraesCS2B02G272600 , TraesCS2B02G272600 , TraesCS2B02G272600 , TraesCS5D02G430700 , TraesCS5B02G424500 , TraesCS2D02G253500 , TraesCS2A02G252900 , TraesCS2D02G253500 , TraesCS5A02G422500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G033300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
2 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
3 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
4 Sobic.003G388100 expressed protein -
5 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
6 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
7 Sobic.001G298900 agenet domain containing protein, putative, expressed -
8 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
9 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
10 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
11 Sobic.001G374100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
12 Sobic.010G010700 PHD-finger family protein, expressed -
13 Sobic.004G143475 - -
14 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
15 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
16 Sobic.006G036566 - -
17 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
18 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
19 Sobic.008G044100 expressed protein -
20 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2


Gene co-expression network
sample Sobic002G033300 Sobic002G033300 Sobic008G001200 Sobic008G001200 Sobic002G033300--Sobic008G001200 Sobic003G155100 Sobic003G155100 Sobic002G033300--Sobic003G155100 Sobic001G230000 Sobic001G230000 Sobic002G033300--Sobic001G230000 Sobic003G388100 Sobic003G388100 Sobic002G033300--Sobic003G388100 Sobic003G205200 Sobic003G205200 Sobic002G033300--Sobic003G205200 Sobic010G206900 Sobic010G206900 Sobic002G033300--Sobic010G206900 Sobic001G298900 Sobic001G298900 Sobic002G033300--Sobic001G298900 Sobic001G457800 Sobic001G457800 Sobic002G033300--Sobic001G457800 Sobic004G263600 Sobic004G263600 Sobic002G033300--Sobic004G263600 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic009G256400 Sobic009G256400 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic010G010700 Sobic010G010700 Sobic008G001200--Sobic010G010700 Sobic001G194200 Sobic001G194200 Sobic008G001200--Sobic001G194200 Sobic005G001000 Sobic005G001000 Sobic008G001200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic003G155100--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic001G230000--Sobic010G206900 Sobic001G230000--Sobic003G155100 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic003G388100--Sobic008G001200 Sobic001G454500 Sobic001G454500 Sobic003G388100--Sobic001G454500 Sobic003G388100--Sobic010G206900 Sobic001G365900 Sobic001G365900 Sobic003G388100--Sobic001G365900 Sobic010G123600 Sobic010G123600 Sobic003G388100--Sobic010G123600 Sobic003G388100--Sobic003G155100 Sobic003G388100--Sobic009G256300 Sobic003G389200 Sobic003G389200 Sobic003G388100--Sobic003G389200 Sobic003G388100--Sobic001G230000 Sobic002G146300 Sobic002G146300 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic003G205200--Sobic001G370900 Sobic003G186000 Sobic003G186000 Sobic003G205200--Sobic003G186000 Sobic010G139600 Sobic010G139600 Sobic003G205200--Sobic010G139600 Sobic003G205200--Sobic004G276400 Sobic003G205200--Sobic001G194200 Sobic008G098900 Sobic008G098900 Sobic003G205200--Sobic008G098900 Sobic010G206900--Sobic010G010700 Sobic010G206900--Sobic001G365900 Sobic004G034900 Sobic004G034900 Sobic010G206900--Sobic004G034900 Sobic001G534700 Sobic001G534700 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic002G411600 Sobic002G411600 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic001G298900--Sobic001G230000 Sobic001G298900--Sobic006G219600 Sobic002G198200 Sobic002G198200 Sobic001G298900--Sobic002G198200 Sobic004G178500 Sobic004G178500 Sobic001G298900--Sobic004G178500 Sobic001G298900--Sobic003G155100 Sobic001G298900--Sobic008G044100 Sobic001G298900--Sobic003G388100 Sobic005G142800 Sobic005G142800 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600 Sobic001G457800--Sobic009G256400 Sobic001G457800--Sobic008G001200 Sobic001G457800--Sobic001G370900 Sobic003G166750 Sobic003G166750 Sobic001G457800--Sobic003G166750 Sobic001G457800--Sobic003G155100 Sobic004G001500 Sobic004G001500 Sobic001G457800--Sobic004G001500 Sobic001G457800--Sobic001G230000 Sobic003G043200 Sobic003G043200 Sobic001G457800--Sobic003G043200 Sobic004G334300 Sobic004G334300 Sobic001G457800--Sobic004G334300 Sobic007G193700 Sobic007G193700 Sobic004G263600--Sobic007G193700 Sobic004G263600--Sobic004G174200 Sobic004G263600--Sobic001G194200 Sobic006G055200 Sobic006G055200 Sobic004G263600--Sobic006G055200 Sobic004G263600--Sobic004G291900 Sobic004G263600--Sobic005G001000 Sobic004G263600--Sobic008G001200 Sobic001G072500 Sobic001G072500 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.