Gene annotation
Transcriptome id Sobic.002G425700.2,Sobic.002G425700.1
Synonym Sb02g043630
Functional annotation ribonucleases P/MRP protein subunit POP1 containing protein, expressed
UniProt A0A1B6QGG3 , A0A1W0W878
Pfam PF06978 PF08170 PF08170
Panther DB PTHR22731 PTHR22731:SF3
NCBI CDD -
KEGG Orthology K01164; ribonuclease P/MRP protein subunit POP1
Gene Ontology GO:0006396; RNA processing GO:0004526ribonuclease P activity GO:0004526ribonuclease P activity GO:0001682tRNA 5'-leader removal GO:0006396RNA processing


Orthologs (automatic annotation)
TAIR AT2G47300 : ribonuclease Ps
RAP-DB (Rice) LOC_Os11g45250.1 : ribonucleases P/MRP protein subunit POP1 containing protein, expressed
MaizeGDB (Corn) Zm00025a049223
Brachypodium KQJ87251
Barley -
Wheat TraesCS4A02G171400 , TraesCS4A02G171400 , TraesCS4A02G171400 , TraesCS4B02G127300 , TraesCS4B02G127300 , TraesCS4B02G127300 , TraesCS4D02G143800 , TraesCS4D02G143800 , TraesCS4D02G143800 , TraesCS4B02G127300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
2 Sobic.006G153900 transporter, major facilitator family, putative, expressed -
3 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
4 Sobic.007G165600 aminopeptidase, putative, expressed K01256: aminopeptidase N
5 Sobic.010G143800 expressed protein -
6 Sobic.001G261501 - -
7 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
8 Sobic.005G122700 PPR repeat domain containing protein, putative, expressed -
9 Sobic.001G090500 YT521-B-like family domain containing protein, expressed -
10 Sobic.004G317100 DENN domain containing protein, expressed -
11 Sobic.003G381200 KH domain containing protein, putative, expressed K14945: protein quaking
12 Sobic.004G033600 expressed protein -
13 Sobic.001G120500 toc64, putative, expressed -
14 Sobic.002G181300 expressed protein -
15 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
16 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
17 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
18 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
19 Sobic.004G181700 calmodulin binding protein, putative, expressed -
20 Sobic.004G030800 expressed protein -


Gene co-expression network
sample Sobic002G425700 Sobic002G425700 Sobic007G065100 Sobic007G065100 Sobic002G425700--Sobic007G065100 Sobic006G153900 Sobic006G153900 Sobic002G425700--Sobic006G153900 Sobic002G276100 Sobic002G276100 Sobic002G425700--Sobic002G276100 Sobic007G165600 Sobic007G165600 Sobic002G425700--Sobic007G165600 Sobic010G143800 Sobic010G143800 Sobic002G425700--Sobic010G143800 Sobic001G261501 Sobic001G261501 Sobic002G425700--Sobic001G261501 Sobic001G498600 Sobic001G498600 Sobic002G425700--Sobic001G498600 Sobic005G122700 Sobic005G122700 Sobic002G425700--Sobic005G122700 Sobic001G090500 Sobic001G090500 Sobic002G425700--Sobic001G090500 Sobic007G065100--Sobic002G425700 Sobic002G181300 Sobic002G181300 Sobic007G065100--Sobic002G181300 Sobic003G381200 Sobic003G381200 Sobic007G065100--Sobic003G381200 Sobic008G172300 Sobic008G172300 Sobic007G065100--Sobic008G172300 Sobic007G065100--Sobic001G090500 Sobic007G065100--Sobic001G498600 Sobic001G072500 Sobic001G072500 Sobic007G065100--Sobic001G072500 Sobic007G065100--Sobic006G153900 Sobic006G119400 Sobic006G119400 Sobic007G065100--Sobic006G119400 Sobic006G153900--Sobic001G498600 Sobic006G153900--Sobic007G065100 Sobic006G153900--Sobic002G425700 Sobic001G178700 Sobic001G178700 Sobic006G153900--Sobic001G178700 Sobic010G112000 Sobic010G112000 Sobic006G153900--Sobic010G112000 Sobic006G131500 Sobic006G131500 Sobic006G153900--Sobic006G131500 Sobic001G291000 Sobic001G291000 Sobic006G153900--Sobic001G291000 Sobic010G000600 Sobic010G000600 Sobic006G153900--Sobic010G000600 Sobic001G384900 Sobic001G384900 Sobic006G153900--Sobic001G384900 Sobic002G276100--Sobic003G381200 Sobic004G026500 Sobic004G026500 Sobic002G276100--Sobic004G026500 Sobic004G181700 Sobic004G181700 Sobic002G276100--Sobic004G181700 Sobic001G159400 Sobic001G159400 Sobic002G276100--Sobic001G159400 Sobic010G138000 Sobic010G138000 Sobic002G276100--Sobic010G138000 Sobic002G168500 Sobic002G168500 Sobic002G276100--Sobic002G168500 Sobic009G193500 Sobic009G193500 Sobic002G276100--Sobic009G193500 Sobic002G276100--Sobic008G172300 Sobic001G268200 Sobic001G268200 Sobic002G276100--Sobic001G268200 Sobic007G103100 Sobic007G103100 Sobic007G165600--Sobic007G103100 Sobic006G055200 Sobic006G055200 Sobic007G165600--Sobic006G055200 Sobic001G004400 Sobic001G004400 Sobic007G165600--Sobic001G004400 Sobic007G165600--Sobic005G122700 Sobic002G133300 Sobic002G133300 Sobic007G165600--Sobic002G133300 Sobic009G056200 Sobic009G056200 Sobic007G165600--Sobic009G056200 Sobic001G194200 Sobic001G194200 Sobic007G165600--Sobic001G194200 Sobic002G316600 Sobic002G316600 Sobic007G165600--Sobic002G316600 Sobic003G186000 Sobic003G186000 Sobic007G165600--Sobic003G186000 Sobic005G027400 Sobic005G027400 Sobic010G143800--Sobic005G027400 Sobic001G081200 Sobic001G081200 Sobic010G143800--Sobic001G081200 Sobic007G161000 Sobic007G161000 Sobic010G143800--Sobic007G161000 Sobic004G006900 Sobic004G006900 Sobic010G143800--Sobic004G006900 Sobic001G529600 Sobic001G529600 Sobic010G143800--Sobic001G529600 Sobic001G365900 Sobic001G365900 Sobic010G143800--Sobic001G365900 Sobic002G294800 Sobic002G294800 Sobic010G143800--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic010G143800--Sobic010G021500 Sobic003G398700 Sobic003G398700 Sobic010G143800--Sobic003G398700 Sobic009G053900 Sobic009G053900 Sobic001G261501--Sobic009G053900 Sobic002G380200 Sobic002G380200 Sobic001G261501--Sobic002G380200 Sobic009G165700 Sobic009G165700 Sobic001G261501--Sobic009G165700 Sobic003G408600 Sobic003G408600 Sobic001G261501--Sobic003G408600 Sobic001G261501--Sobic005G027400 Sobic001G540400 Sobic001G540400 Sobic001G261501--Sobic001G540400 Sobic007G157000 Sobic007G157000 Sobic001G261501--Sobic007G157000 Sobic003G422500 Sobic003G422500 Sobic001G261501--Sobic003G422500 Sobic007G063000 Sobic007G063000 Sobic001G261501--Sobic007G063000 Sobic001G498600--Sobic010G112000 Sobic001G498600--Sobic006G131500 Sobic001G146800 Sobic001G146800 Sobic001G498600--Sobic001G146800 Sobic005G008800 Sobic005G008800 Sobic001G498600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic001G498600--Sobic002G134200 Sobic001G058700 Sobic001G058700 Sobic001G498600--Sobic001G058700 Sobic004G317100 Sobic004G317100 Sobic001G498600--Sobic004G317100 Sobic007G193700 Sobic007G193700 Sobic001G498600--Sobic007G193700 Sobic007G172400 Sobic007G172400 Sobic001G498600--Sobic007G172400 Sobic005G122700--Sobic002G316600 Sobic005G122700--Sobic007G103100 Sobic003G166750 Sobic003G166750 Sobic005G122700--Sobic003G166750 Sobic005G122700--Sobic001G529600 Sobic005G122700--Sobic002G133300 Sobic001G527800 Sobic001G527800 Sobic005G122700--Sobic001G527800 Sobic001G289800 Sobic001G289800 Sobic005G122700--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic005G122700--Sobic010G079500 Sobic001G542500 Sobic001G542500 Sobic005G122700--Sobic001G542500 Sobic001G090500--Sobic003G381200 Sobic001G090500--Sobic001G159400 Sobic003G106200 Sobic003G106200 Sobic001G090500--Sobic003G106200 Sobic001G090500--Sobic007G193700 Sobic001G090500--Sobic007G065100 Sobic004G035000 Sobic004G035000 Sobic001G090500--Sobic004G035000 Sobic001G090500--Sobic004G317100 Sobic002G169633 Sobic002G169633 Sobic001G090500--Sobic002G169633 Sobic002G031400 Sobic002G031400 Sobic001G090500--Sobic002G031400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.