Gene annotation
Transcriptome id Sobic.001G498600.2,Sobic.001G498600.3,Sobic.001G498600.1,Sobic.001G498600.4
Synonym Sb01g046585
Functional annotation 3-5 exonuclease family protein, putative, expressed
UniProt A0A1Z5SB97 , C5WXS8 , A0A1Z5SBB2 , A0A1B6QQE5
Pfam PF00570 PF01612 PF01612 PF00570
Panther DB PTHR12124 PTHR12124:SF43 PTHR12124:SF43 PTHR12124
NCBI CDD -
KEGG Orthology K12591; RRP6, exosome complex exonuclease RRP6
Gene Ontology GO:0005622; intracellular GO:0003676nucleic acid binding GO:00084083'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0006139nucleobase-containing compound metabolic process GO:00084083'-5' exonuclease activity GO:0003676nucleic acid binding GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT5G35910 : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
RAP-DB (Rice) LOC_Os03g06190.1 : 3-5 exonuclease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a003628 , Zm00025a036043 , Zm00025a005231 , Zm00025a005230 , Zm00025a051211 , Zm00025a006828 , Zm00025a000724 , Zm00025a012497 , Zm00025a058017 , Zm00025a058016 , Zm00025a058015 , Zm00025a058106
Brachypodium KQK23562 , KQJ96813 , PNT78163 , PNT67421 , PNT78162 , KQK23561
Barley HORVU4Hr1G072900.14 , HORVU4Hr1G072900.10 , HORVU4Hr1G072900.11 , HORVU4Hr1G072900.12 , HORVU4Hr1G072900.13 , HORVU4Hr1G072900.6 , HORVU4Hr1G072900.7 , HORVU4Hr1G072900.5 , HORVU4Hr1G072900.2 , HORVU4Hr1G072900.3 , HORVU4Hr1G072900.1 , HORVU4Hr1G072900.8 , HORVU4Hr1G072900.9
Wheat TraesCS4D02G272400 , TraesCS4D02G272400 , TraesCS1D02G138000 , TraesCS1B02G155600 , TraesCS4A02G032200 , TraesCS1B02G155600 , TraesCS1A02G137000 , TraesCS1A02G137000 , TraesCS4B02G273400 , TraesCS4B02G273400
Populus -


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cDNA sequences
Sobic.001G498600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G112000 expressed protein K17906: autophagy-related protein 2
2 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4
3 Sobic.001G146800 expressed protein -
4 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
5 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
6 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
7 Sobic.004G317100 DENN domain containing protein, expressed -
8 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
9 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
10 Sobic.005G032800 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
11 Sobic.001G289600 BAH domain containing protein, putative, expressed -
12 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
13 Sobic.001G241200 protein kinase domain containing protein, expressed -
14 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
15 Sobic.002G380200 calmodulin-binding transcription activator, putative, expressed -
16 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
17 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
18 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
19 Sobic.001G292200 dynamin family protein, putative, expressed -
20 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family


Gene co-expression network
sample Sobic001G498600 Sobic001G498600 Sobic010G112000 Sobic010G112000 Sobic001G498600--Sobic010G112000 Sobic006G131500 Sobic006G131500 Sobic001G498600--Sobic006G131500 Sobic001G146800 Sobic001G146800 Sobic001G498600--Sobic001G146800 Sobic005G008800 Sobic005G008800 Sobic001G498600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic001G498600--Sobic002G134200 Sobic001G058700 Sobic001G058700 Sobic001G498600--Sobic001G058700 Sobic004G317100 Sobic004G317100 Sobic001G498600--Sobic004G317100 Sobic007G193700 Sobic007G193700 Sobic001G498600--Sobic007G193700 Sobic007G172400 Sobic007G172400 Sobic001G498600--Sobic007G172400 Sobic010G112000--Sobic001G498600 Sobic004G034900 Sobic004G034900 Sobic010G112000--Sobic004G034900 Sobic002G008900 Sobic002G008900 Sobic010G112000--Sobic002G008900 Sobic001G540400 Sobic001G540400 Sobic010G112000--Sobic001G540400 Sobic001G289600 Sobic001G289600 Sobic010G112000--Sobic001G289600 Sobic010G112000--Sobic001G146800 Sobic010G112000--Sobic005G008800 Sobic001G280900 Sobic001G280900 Sobic010G112000--Sobic001G280900 Sobic010G112000--Sobic001G058700 Sobic006G131500--Sobic005G008800 Sobic006G131500--Sobic001G498600 Sobic004G209600 Sobic004G209600 Sobic006G131500--Sobic004G209600 Sobic003G280800 Sobic003G280800 Sobic006G131500--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic006G131500--Sobic006G216800 Sobic001G241200 Sobic001G241200 Sobic006G131500--Sobic001G241200 Sobic006G131500--Sobic002G134200 Sobic006G131500--Sobic001G146800 Sobic001G072500 Sobic001G072500 Sobic006G131500--Sobic001G072500 Sobic001G146800--Sobic001G058700 Sobic004G200200 Sobic004G200200 Sobic001G146800--Sobic004G200200 Sobic001G146800--Sobic001G498600 Sobic004G347400 Sobic004G347400 Sobic001G146800--Sobic004G347400 Sobic001G146800--Sobic010G112000 Sobic001G178700 Sobic001G178700 Sobic001G146800--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G146800--Sobic004G113400 Sobic001G146800--Sobic006G131500 Sobic001G146800--Sobic007G172400 Sobic005G008800--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic005G008800--Sobic003G408600 Sobic005G112300 Sobic005G112300 Sobic005G008800--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G309600 Sobic002G309600 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G134200--Sobic002G008900 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic001G058700--Sobic007G062800 Sobic001G058700--Sobic001G540400 Sobic001G058700--Sobic005G008800 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic004G181700 Sobic004G181700 Sobic004G317100--Sobic004G181700 Sobic004G317100--Sobic001G498600 Sobic003G359600 Sobic003G359600 Sobic004G317100--Sobic003G359600 Sobic004G317100--Sobic007G193700 Sobic001G159400 Sobic001G159400 Sobic004G317100--Sobic001G159400 Sobic010G256700 Sobic010G256700 Sobic004G317100--Sobic010G256700 Sobic001G365900 Sobic001G365900 Sobic004G317100--Sobic001G365900 Sobic004G317100--Sobic010G112000 Sobic002G173000 Sobic002G173000 Sobic004G317100--Sobic002G173000 Sobic004G263600 Sobic004G263600 Sobic007G193700--Sobic004G263600 Sobic003G086900 Sobic003G086900 Sobic007G193700--Sobic003G086900 Sobic007G193700--Sobic004G200200 Sobic004G174200 Sobic004G174200 Sobic007G193700--Sobic004G174200 Sobic007G193700--Sobic002G134200 Sobic010G239600 Sobic010G239600 Sobic007G193700--Sobic010G239600 Sobic003G139900 Sobic003G139900 Sobic007G193700--Sobic003G139900 Sobic003G247500 Sobic003G247500 Sobic007G193700--Sobic003G247500 Sobic003G396200 Sobic003G396200 Sobic007G193700--Sobic003G396200 Sobic007G172400--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic007G172400--Sobic002G071500 Sobic007G172400--Sobic001G050600 Sobic007G172400--Sobic004G347400 Sobic002G419800 Sobic002G419800 Sobic007G172400--Sobic002G419800 Sobic007G172400--Sobic001G219900 Sobic007G172400--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic007G172400--Sobic001G474600 Sobic007G172400--Sobic003G408600
Octagon: transcription factors


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