Gene annotation
Transcriptome id Sobic.005G032800.1,Sobic.005G032800.2
Synonym Sb05g002755, SMU2
Functional annotation splicing factor, putative, expressed
UniProt A0A1B6PPW9
Pfam PF07807 PF07808
Panther DB PTHR12765 PTHR12765:SF5
NCBI CDD KOG2498; IK cytokine down-regulator of HLA class II
KEGG Orthology K13109; IK, RED, IK cytokine
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT2G26460 : RED family protein
RAP-DB (Rice) LOC_Os11g04950.1 : splicing factor, putative, expressed
MaizeGDB (Corn) Zm00025a028947 , Zm00025a053676
Brachypodium KQJ89586 , PNT64246
Barley -
Wheat TraesCS4D02G128600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
2 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
3 Sobic.002G173000 disease resistance protein RGA2, putative, expressed -
4 Sobic.006G021250 - -
5 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
6 Sobic.002G169633 - -
7 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
8 Sobic.010G112000 expressed protein K17906: autophagy-related protein 2
9 Sobic.001G292200 dynamin family protein, putative, expressed -
10 Sobic.006G209850 - -
11 Sobic.003G113200 5-nucleotidase domain-containing protein, putative, expressed -
12 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
13 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4
14 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
15 Sobic.009G221000 NBS-LRR disease resistance protein, putative, expressed -
16 Sobic.010G239600 RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed K15216: RRN3, RNA polymerase I-specific transcription initiation factor RRN3
17 Sobic.008G024600 expressed protein -
18 Sobic.005G090401 - -
19 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
20 Sobic.001G228800 - -


Gene co-expression network
sample Sobic005G032800 Sobic005G032800 Sobic003G280800 Sobic003G280800 Sobic005G032800--Sobic003G280800 Sobic001G474600 Sobic001G474600 Sobic005G032800--Sobic001G474600 Sobic002G173000 Sobic002G173000 Sobic005G032800--Sobic002G173000 Sobic006G021250 Sobic006G021250 Sobic005G032800--Sobic006G021250 Sobic002G134200 Sobic002G134200 Sobic005G032800--Sobic002G134200 Sobic002G169633 Sobic002G169633 Sobic005G032800--Sobic002G169633 Sobic001G498600 Sobic001G498600 Sobic005G032800--Sobic001G498600 Sobic010G112000 Sobic010G112000 Sobic005G032800--Sobic010G112000 Sobic001G292200 Sobic001G292200 Sobic005G032800--Sobic001G292200 Sobic002G309600 Sobic002G309600 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic001G474600--Sobic003G280800 Sobic009G166300 Sobic009G166300 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic001G474600--Sobic003G372700 Sobic007G217000 Sobic007G217000 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic009G191000 Sobic009G191000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200 Sobic006G182900 Sobic006G182900 Sobic002G173000--Sobic006G182900 Sobic001G214300 Sobic001G214300 Sobic002G173000--Sobic001G214300 Sobic002G173000--Sobic005G032800 Sobic002G173000--Sobic006G021250 Sobic010G248700 Sobic010G248700 Sobic002G173000--Sobic010G248700 Sobic008G027000 Sobic008G027000 Sobic002G173000--Sobic008G027000 Sobic001G287201 Sobic001G287201 Sobic002G173000--Sobic001G287201 Sobic001G318432 Sobic001G318432 Sobic002G173000--Sobic001G318432 Sobic002G173000--Sobic001G474600 Sobic006G021250--Sobic006G209850 Sobic006G021250--Sobic003G280800 Sobic008G024600 Sobic008G024600 Sobic006G021250--Sobic008G024600 Sobic006G021250--Sobic002G173000 Sobic003G113200 Sobic003G113200 Sobic006G021250--Sobic003G113200 Sobic005G079025 Sobic005G079025 Sobic006G021250--Sobic005G079025 Sobic006G021250--Sobic005G032800 Sobic006G128900 Sobic006G128900 Sobic006G021250--Sobic006G128900 Sobic005G077466 Sobic005G077466 Sobic006G021250--Sobic005G077466 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic001G072500 Sobic001G072500 Sobic002G169633--Sobic001G072500 Sobic002G169633--Sobic005G032800 Sobic004G359800 Sobic004G359800 Sobic002G169633--Sobic004G359800 Sobic004G263600 Sobic004G263600 Sobic002G169633--Sobic004G263600 Sobic004G174200 Sobic004G174200 Sobic002G169633--Sobic004G174200 Sobic010G239600 Sobic010G239600 Sobic002G169633--Sobic010G239600 Sobic007G020500 Sobic007G020500 Sobic002G169633--Sobic007G020500 Sobic006G131500 Sobic006G131500 Sobic002G169633--Sobic006G131500 Sobic007G193700 Sobic007G193700 Sobic002G169633--Sobic007G193700 Sobic001G498600--Sobic010G112000 Sobic001G498600--Sobic006G131500 Sobic001G146800 Sobic001G146800 Sobic001G498600--Sobic001G146800 Sobic001G498600--Sobic005G008800 Sobic001G498600--Sobic002G134200 Sobic001G058700 Sobic001G058700 Sobic001G498600--Sobic001G058700 Sobic004G317100 Sobic004G317100 Sobic001G498600--Sobic004G317100 Sobic001G498600--Sobic007G193700 Sobic007G172400 Sobic007G172400 Sobic001G498600--Sobic007G172400 Sobic010G112000--Sobic001G498600 Sobic004G034900 Sobic004G034900 Sobic010G112000--Sobic004G034900 Sobic010G112000--Sobic002G008900 Sobic001G540400 Sobic001G540400 Sobic010G112000--Sobic001G540400 Sobic001G289600 Sobic001G289600 Sobic010G112000--Sobic001G289600 Sobic010G112000--Sobic001G146800 Sobic010G112000--Sobic005G008800 Sobic001G280900 Sobic001G280900 Sobic010G112000--Sobic001G280900 Sobic010G112000--Sobic001G058700 Sobic002G340100 Sobic002G340100 Sobic001G292200--Sobic002G340100 Sobic001G292200--Sobic002G134200 Sobic001G292200--Sobic003G280800 Sobic002G053000 Sobic002G053000 Sobic001G292200--Sobic002G053000 Sobic001G292200--Sobic005G032800 Sobic001G292200--Sobic008G024600 Sobic003G001100 Sobic003G001100 Sobic001G292200--Sobic003G001100 Sobic001G178700 Sobic001G178700 Sobic001G292200--Sobic001G178700 Sobic001G292200--Sobic001G071400
Octagon: transcription factors


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