Gene annotation
Transcriptome id Sobic.010G239600.1,Sobic.010G239600.2
Synonym Sb10g028030
Functional annotation RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed
UniProt A0A194YL28 , A0A1W0VUJ6
Pfam PF05327
Panther DB PTHR12790
NCBI CDD KOG2434; RNA polymerase I transcription factor
KEGG Orthology K15216; RRN3, RNA polymerase I-specific transcription initiation factor RRN3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34750 : RNA polymerase I specific transcription initiation factor RRN3 protein
RAP-DB (Rice) LOC_Os06g47350.2 : RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a018262
Brachypodium KQK17263 , KQK17262
Barley HORVU7Hr1G100370.1 , HORVU7Hr1G100370.2 , HORVU7Hr1G100370.3 , HORVU7Hr1G100370.4 , HORVU7Hr1G100370.5 , HORVU7Hr1G100370.6 , HORVU7Hr1G100370.7 , HORVU7Hr1G100370.8 , HORVU7Hr1G100370.9 , HORVU7Hr1G100370.12 , HORVU7Hr1G100370.11
Wheat TraesCS7D02G430000 , TraesCS7D02G430000 , TraesCS7D02G430000 , TraesCS6D02G161100 , TraesCS6D02G161100 , TraesCS6D02G161100 , TraesCS7A02G440500 , TraesCS7A02G440500 , TraesCS6B02G199600 , TraesCS6B02G199600 , TraesCS6A02G171400 , TraesCS6A02G171400 , TraesCS7B02G339300 , TraesCS7B02G339300
Populus -


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cDNA sequences
Sobic.010G239600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
2 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
3 Sobic.010G112000 expressed protein K17906: autophagy-related protein 2
4 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
5 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
6 Sobic.010G010700 PHD-finger family protein, expressed -
7 Sobic.002G169633 - -
8 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
9 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
10 Sobic.001G365900 PWWP domain containing protein, expressed -
11 Sobic.005G032800 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
12 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
13 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
14 Sobic.010G256700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
15 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
16 Sobic.003G247500 expressed protein -
17 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
18 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
19 Sobic.003G388100 expressed protein -
20 Sobic.008G016300 expressed protein -


Gene co-expression network
sample Sobic010G239600 Sobic010G239600 Sobic007G193700 Sobic007G193700 Sobic010G239600--Sobic007G193700 Sobic006G055200 Sobic006G055200 Sobic010G239600--Sobic006G055200 Sobic010G112000 Sobic010G112000 Sobic010G239600--Sobic010G112000 Sobic002G008900 Sobic002G008900 Sobic010G239600--Sobic002G008900 Sobic004G263600 Sobic004G263600 Sobic010G239600--Sobic004G263600 Sobic010G010700 Sobic010G010700 Sobic010G239600--Sobic010G010700 Sobic002G169633 Sobic002G169633 Sobic010G239600--Sobic002G169633 Sobic005G001000 Sobic005G001000 Sobic010G239600--Sobic005G001000 Sobic001G454500 Sobic001G454500 Sobic010G239600--Sobic001G454500 Sobic007G193700--Sobic004G263600 Sobic003G086900 Sobic003G086900 Sobic007G193700--Sobic003G086900 Sobic004G200200 Sobic004G200200 Sobic007G193700--Sobic004G200200 Sobic004G174200 Sobic004G174200 Sobic007G193700--Sobic004G174200 Sobic002G134200 Sobic002G134200 Sobic007G193700--Sobic002G134200 Sobic007G193700--Sobic010G239600 Sobic003G139900 Sobic003G139900 Sobic007G193700--Sobic003G139900 Sobic003G247500 Sobic003G247500 Sobic007G193700--Sobic003G247500 Sobic003G396200 Sobic003G396200 Sobic007G193700--Sobic003G396200 Sobic001G194200 Sobic001G194200 Sobic006G055200--Sobic001G194200 Sobic006G055200--Sobic010G010700 Sobic006G055200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic006G055200--Sobic004G276400 Sobic004G291900 Sobic004G291900 Sobic006G055200--Sobic004G291900 Sobic003G186000 Sobic003G186000 Sobic006G055200--Sobic003G186000 Sobic001G289800 Sobic001G289800 Sobic006G055200--Sobic001G289800 Sobic006G055200--Sobic004G263600 Sobic001G002000 Sobic001G002000 Sobic006G055200--Sobic001G002000 Sobic001G498600 Sobic001G498600 Sobic010G112000--Sobic001G498600 Sobic004G034900 Sobic004G034900 Sobic010G112000--Sobic004G034900 Sobic010G112000--Sobic002G008900 Sobic001G540400 Sobic001G540400 Sobic010G112000--Sobic001G540400 Sobic001G289600 Sobic001G289600 Sobic010G112000--Sobic001G289600 Sobic001G146800 Sobic001G146800 Sobic010G112000--Sobic001G146800 Sobic005G008800 Sobic005G008800 Sobic010G112000--Sobic005G008800 Sobic001G280900 Sobic001G280900 Sobic010G112000--Sobic001G280900 Sobic001G058700 Sobic001G058700 Sobic010G112000--Sobic001G058700 Sobic009G191000 Sobic009G191000 Sobic002G008900--Sobic009G191000 Sobic002G411600 Sobic002G411600 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic003G422500 Sobic003G422500 Sobic002G008900--Sobic003G422500 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic010G206900 Sobic010G206900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic004G263600--Sobic007G193700 Sobic004G263600--Sobic004G174200 Sobic004G263600--Sobic001G194200 Sobic004G263600--Sobic006G055200 Sobic004G263600--Sobic004G291900 Sobic004G263600--Sobic005G001000 Sobic008G001200 Sobic008G001200 Sobic004G263600--Sobic008G001200 Sobic001G072500 Sobic001G072500 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic002G169633--Sobic001G072500 Sobic005G032800 Sobic005G032800 Sobic002G169633--Sobic005G032800 Sobic004G359800 Sobic004G359800 Sobic002G169633--Sobic004G359800 Sobic002G169633--Sobic004G263600 Sobic002G169633--Sobic004G174200 Sobic002G169633--Sobic010G239600 Sobic007G020500 Sobic007G020500 Sobic002G169633--Sobic007G020500 Sobic006G131500 Sobic006G131500 Sobic002G169633--Sobic006G131500 Sobic002G169633--Sobic007G193700 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic003G205200 Sobic003G205200 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic005G001000--Sobic003G422500 Sobic009G256400 Sobic009G256400 Sobic005G001000--Sobic009G256400 Sobic003G388100 Sobic003G388100 Sobic001G454500--Sobic003G388100 Sobic008G130100 Sobic008G130100 Sobic001G454500--Sobic008G130100 Sobic006G133900 Sobic006G133900 Sobic001G454500--Sobic006G133900 Sobic001G375100 Sobic001G375100 Sobic001G454500--Sobic001G375100 Sobic001G365900 Sobic001G365900 Sobic001G454500--Sobic001G365900 Sobic001G454500--Sobic008G001200 Sobic001G454500--Sobic010G010700 Sobic003G155100 Sobic003G155100 Sobic001G454500--Sobic003G155100 Sobic001G454500--Sobic003G247500
Octagon: transcription factors


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