Gene annotation
Transcriptome id Sobic.002G197300.1
Synonym MSH6-1, ATMSH6, MSH6
Functional annotation MSH-like DNA mismatch repair protein, putative, expressed
UniProt A0A1B6QCH6
Pfam PF05188 PF05190 PF05192 PF01624 PF00488
Panther DB PTHR11361 PTHR11361:SF89
NCBI CDD -
KEGG Orthology K08737; DNA mismatch repair protein MSH6
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT4G02070 : MUTS homolog 6
RAP-DB (Rice) LOC_Os09g24220.1 : MSH-like DNA mismatch repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a046931
Brachypodium PNT64532 , KQJ90178
Barley HORVU5Hr1G061020.46 , HORVU5Hr1G061020.29 , HORVU5Hr1G061020.28 , HORVU5Hr1G061020.23 , HORVU5Hr1G061020.22 , HORVU5Hr1G061020.21 , HORVU5Hr1G061020.20 , HORVU5Hr1G061020.27 , HORVU5Hr1G061020.26 , HORVU5Hr1G061020.25 , HORVU5Hr1G061020.24 , HORVU5Hr1G061020.56 , HORVU5Hr1G061020.57 , HORVU5Hr1G061020.54 , HORVU5Hr1G061020.52 , HORVU5Hr1G061020.53 , HORVU5Hr1G061020.50 , HORVU5Hr1G061020.51 , HORVU5Hr1G061020.30 , HORVU5Hr1G061020.38 , HORVU5Hr1G061020.39 , HORVU5Hr1G061020.31 , HORVU5Hr1G061020.32 , HORVU5Hr1G061020.33 , HORVU5Hr1G061020.35 , HORVU5Hr1G061020.36 , HORVU5Hr1G061020.37 , HORVU5Hr1G061020.55 , HORVU5Hr1G061020.49 , HORVU5Hr1G061020.48 , HORVU5Hr1G061020.41 , HORVU5Hr1G061020.40 , HORVU5Hr1G061020.43 , HORVU5Hr1G061020.42 , HORVU5Hr1G061020.45 , HORVU5Hr1G061020.44 , HORVU5Hr1G061020.47 , HORVU5Hr1G061100.1 , HORVU5Hr1G061020.13 , HORVU5Hr1G061020.8 , HORVU5Hr1G061020.9 , HORVU5Hr1G061020.1 , HORVU5Hr1G061020.2 , HORVU5Hr1G061020.3 , HORVU5Hr1G061020.4 , HORVU5Hr1G061020.5 , HORVU5Hr1G061020.6 , HORVU5Hr1G061020.7 , HORVU5Hr1G061020.12 , HORVU5Hr1G061020.10 , HORVU5Hr1G061020.11 , HORVU5Hr1G061020.16 , HORVU5Hr1G061020.17 , HORVU5Hr1G061020.14 , HORVU5Hr1G061020.15 , HORVU5Hr1G061020.18 , HORVU5Hr1G061020.19
Wheat TraesCS5A02G206300 , TraesCS5D02G212500
Populus -


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cDNA sequences
Sobic.002G197300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G431400 - -
2 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
3 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
4 Sobic.003G391400 recA protein, putative, expressed K03553: recombination protein RecA
5 Sobic.003G106200 expressed protein K13144: integrator complex subunit 7
6 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
7 Sobic.001G172700 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
8 Sobic.003G101500 dnaJ domain containing protein, expressed -
9 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.006G137600 AT hook motif family protein, expressed -
11 Sobic.010G172000 - -
12 Sobic.007G074600 tetratricopeptide repeat domain containing protein, expressed K15201: GTP3C3, general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
13 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
14 Sobic.002G234700 expressed protein -
15 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
16 Sobic.002G029900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
18 Sobic.005G079025 - -
19 Sobic.001G456900 expressed protein -
20 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin


Gene co-expression network
sample Sobic002G197300 Sobic002G197300 Sobic002G431400 Sobic002G431400 Sobic002G197300--Sobic002G431400 Sobic002G031400 Sobic002G031400 Sobic002G197300--Sobic002G031400 Sobic004G107200 Sobic004G107200 Sobic002G197300--Sobic004G107200 Sobic003G391400 Sobic003G391400 Sobic002G197300--Sobic003G391400 Sobic003G106200 Sobic003G106200 Sobic002G197300--Sobic003G106200 Sobic007G161000 Sobic007G161000 Sobic002G197300--Sobic007G161000 Sobic001G172700 Sobic001G172700 Sobic002G197300--Sobic001G172700 Sobic003G101500 Sobic003G101500 Sobic002G197300--Sobic003G101500 Sobic002G296100 Sobic002G296100 Sobic002G197300--Sobic002G296100 Sobic002G431400--Sobic004G107200 Sobic007G210000 Sobic007G210000 Sobic002G431400--Sobic007G210000 Sobic008G092532 Sobic008G092532 Sobic002G431400--Sobic008G092532 Sobic010G172000 Sobic010G172000 Sobic002G431400--Sobic010G172000 Sobic001G540800 Sobic001G540800 Sobic002G431400--Sobic001G540800 Sobic002G309200 Sobic002G309200 Sobic002G431400--Sobic002G309200 Sobic002G425500 Sobic002G425500 Sobic002G431400--Sobic002G425500 Sobic002G431400--Sobic002G197300 Sobic006G269800 Sobic006G269800 Sobic002G431400--Sobic006G269800 Sobic010G277500 Sobic010G277500 Sobic002G031400--Sobic010G277500 Sobic002G031400--Sobic007G161000 Sobic001G035900 Sobic001G035900 Sobic002G031400--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic002G031400--Sobic003G254000 Sobic008G011100 Sobic008G011100 Sobic002G031400--Sobic008G011100 Sobic010G176550 Sobic010G176550 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic009G260500 Sobic009G260500 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic004G107200--Sobic002G431400 Sobic004G107200--Sobic002G425500 Sobic006G119400 Sobic006G119400 Sobic004G107200--Sobic006G119400 Sobic004G107200--Sobic003G101500 Sobic002G043100 Sobic002G043100 Sobic004G107200--Sobic002G043100 Sobic001G501800 Sobic001G501800 Sobic004G107200--Sobic001G501800 Sobic001G456900 Sobic001G456900 Sobic004G107200--Sobic001G456900 Sobic001G261900 Sobic001G261900 Sobic004G107200--Sobic001G261900 Sobic004G107200--Sobic006G269800 Sobic004G025800 Sobic004G025800 Sobic003G391400--Sobic004G025800 Sobic003G101700 Sobic003G101700 Sobic003G391400--Sobic003G101700 Sobic003G391400--Sobic001G172700 Sobic004G030800 Sobic004G030800 Sobic003G391400--Sobic004G030800 Sobic001G072500 Sobic001G072500 Sobic003G391400--Sobic001G072500 Sobic002G316600 Sobic002G316600 Sobic003G391400--Sobic002G316600 Sobic003G391400--Sobic002G197300 Sobic009G215500 Sobic009G215500 Sobic003G391400--Sobic009G215500 Sobic004G134200 Sobic004G134200 Sobic003G391400--Sobic004G134200 Sobic001G090500 Sobic001G090500 Sobic003G106200--Sobic001G090500 Sobic004G018300 Sobic004G018300 Sobic003G106200--Sobic004G018300 Sobic003G106200--Sobic002G031400 Sobic004G359800 Sobic004G359800 Sobic003G106200--Sobic004G359800 Sobic007G099000 Sobic007G099000 Sobic003G106200--Sobic007G099000 Sobic003G381200 Sobic003G381200 Sobic003G106200--Sobic003G381200 Sobic004G223600 Sobic004G223600 Sobic003G106200--Sobic004G223600 Sobic009G085400 Sobic009G085400 Sobic003G106200--Sobic009G085400 Sobic007G065100 Sobic007G065100 Sobic003G106200--Sobic007G065100 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic002G309600 Sobic002G309600 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic001G172700--Sobic004G134200 Sobic001G172700--Sobic009G215500 Sobic001G172700--Sobic004G025800 Sobic006G137600 Sobic006G137600 Sobic001G172700--Sobic006G137600 Sobic003G434700 Sobic003G434700 Sobic001G172700--Sobic003G434700 Sobic010G053600 Sobic010G053600 Sobic001G172700--Sobic010G053600 Sobic008G044100 Sobic008G044100 Sobic001G172700--Sobic008G044100 Sobic005G142800 Sobic005G142800 Sobic001G172700--Sobic005G142800 Sobic010G051700 Sobic010G051700 Sobic001G172700--Sobic010G051700 Sobic003G101500--Sobic004G039200 Sobic003G101500--Sobic004G258700 Sobic003G101500--Sobic007G161000 Sobic003G101500--Sobic009G260500 Sobic007G054400 Sobic007G054400 Sobic003G101500--Sobic007G054400 Sobic003G101500--Sobic001G456900 Sobic008G113100 Sobic008G113100 Sobic003G101500--Sobic008G113100 Sobic003G101500--Sobic008G028700 Sobic003G101500--Sobic009G024000 Sobic002G042500 Sobic002G042500 Sobic002G296100--Sobic002G042500 Sobic001G037500 Sobic001G037500 Sobic002G296100--Sobic001G037500 Sobic002G347600 Sobic002G347600 Sobic002G296100--Sobic002G347600 Sobic004G020800 Sobic004G020800 Sobic002G296100--Sobic004G020800 Sobic002G296100--Sobic003G434700 Sobic004G206200 Sobic004G206200 Sobic002G296100--Sobic004G206200 Sobic006G128300 Sobic006G128300 Sobic002G296100--Sobic006G128300 Sobic002G081500 Sobic002G081500 Sobic002G296100--Sobic002G081500 Sobic001G022500 Sobic001G022500 Sobic002G296100--Sobic001G022500
Octagon: transcription factors


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