Gene annotation
Transcriptome id Sobic.003G106200.3,Sobic.003G106200.2,Sobic.003G106200.6,Sobic.003G106200.8,Sobic.003G106200.1,Sobic.003G106200.4,Sobic.003G106200.7,Sobic.003G106200.5
Synonym EMB1895, Sb03g008920
Functional annotation expressed protein
UniProt A0A1W0VWS3 , A0A1W0VWR3 , A0A1W0VWN5 , A0A1W0VWQ9
Pfam -
Panther DB PTHR13322 PTHR13322:SF2
NCBI CDD KOG1988; Uncharacterized conserved protein
KEGG Orthology K13144; integrator complex subunit 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20060 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os01g01380.1 : expressed protein
MaizeGDB (Corn) Zm00025a023844
Brachypodium -
Barley HORVU3Hr1G014240.29 , HORVU3Hr1G014240.27 , HORVU3Hr1G014240.38 , HORVU3Hr1G014240.39 , HORVU3Hr1G014240.36 , HORVU3Hr1G014240.37 , HORVU3Hr1G014240.34 , HORVU3Hr1G014240.35 , HORVU3Hr1G014240.32 , HORVU3Hr1G014240.30 , HORVU3Hr1G014240.31 , HORVU3Hr1G014240.49 , HORVU3Hr1G014240.43 , HORVU3Hr1G014240.42 , HORVU3Hr1G014240.41 , HORVU3Hr1G014240.47 , HORVU3Hr1G014240.46 , HORVU3Hr1G014240.45 , HORVU3Hr1G014240.44 , HORVU3Hr1G014240.58 , HORVU3Hr1G014240.59 , HORVU3Hr1G014240.50 , HORVU3Hr1G014240.52 , HORVU3Hr1G014240.54 , HORVU3Hr1G014240.56 , HORVU3Hr1G014240.3 , HORVU3Hr1G014240.28
Wheat TraesCS3B02G094000 , TraesCS3A02G078900 , TraesCS3A02G078900 , TraesCS3A02G078900 , TraesCS3D02G079400 , TraesCS3D02G079400 , TraesCS3D02G079400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G090500 YT521-B-like family domain containing protein, expressed -
2 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
3 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
4 Sobic.004G359800 inositol-1-monophosphatase, putative, expressed -
5 Sobic.007G099000 - -
6 Sobic.003G381200 KH domain containing protein, putative, expressed K14945: protein quaking
7 Sobic.004G223600 transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
8 Sobic.009G085400 acyl-activating enzyme 14, putative, expressed -
9 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
10 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
11 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
12 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
13 Sobic.006G209850 - -
14 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
15 Sobic.002G298100 expressed protein -
16 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
17 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
18 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4
19 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
20 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1


Gene co-expression network
sample Sobic003G106200 Sobic003G106200 Sobic001G090500 Sobic001G090500 Sobic003G106200--Sobic001G090500 Sobic004G018300 Sobic004G018300 Sobic003G106200--Sobic004G018300 Sobic002G031400 Sobic002G031400 Sobic003G106200--Sobic002G031400 Sobic004G359800 Sobic004G359800 Sobic003G106200--Sobic004G359800 Sobic007G099000 Sobic007G099000 Sobic003G106200--Sobic007G099000 Sobic003G381200 Sobic003G381200 Sobic003G106200--Sobic003G381200 Sobic004G223600 Sobic004G223600 Sobic003G106200--Sobic004G223600 Sobic009G085400 Sobic009G085400 Sobic003G106200--Sobic009G085400 Sobic007G065100 Sobic007G065100 Sobic003G106200--Sobic007G065100 Sobic001G090500--Sobic003G381200 Sobic001G159400 Sobic001G159400 Sobic001G090500--Sobic001G159400 Sobic001G090500--Sobic003G106200 Sobic007G193700 Sobic007G193700 Sobic001G090500--Sobic007G193700 Sobic001G090500--Sobic007G065100 Sobic004G035000 Sobic004G035000 Sobic001G090500--Sobic004G035000 Sobic004G317100 Sobic004G317100 Sobic001G090500--Sobic004G317100 Sobic002G169633 Sobic002G169633 Sobic001G090500--Sobic002G169633 Sobic001G090500--Sobic002G031400 Sobic004G087600 Sobic004G087600 Sobic004G018300--Sobic004G087600 Sobic001G167200 Sobic001G167200 Sobic004G018300--Sobic001G167200 Sobic008G011100 Sobic008G011100 Sobic004G018300--Sobic008G011100 Sobic002G158700 Sobic002G158700 Sobic004G018300--Sobic002G158700 Sobic002G396000 Sobic002G396000 Sobic004G018300--Sobic002G396000 Sobic001G081000 Sobic001G081000 Sobic004G018300--Sobic001G081000 Sobic008G083000 Sobic008G083000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G018300--Sobic004G223600 Sobic010G277500 Sobic010G277500 Sobic002G031400--Sobic010G277500 Sobic007G161000 Sobic007G161000 Sobic002G031400--Sobic007G161000 Sobic001G035900 Sobic001G035900 Sobic002G031400--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic002G031400--Sobic003G254000 Sobic002G031400--Sobic008G011100 Sobic010G176550 Sobic010G176550 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic009G260500 Sobic009G260500 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic007G116200 Sobic007G116200 Sobic004G359800--Sobic007G116200 Sobic004G359800--Sobic002G169633 Sobic003G138500 Sobic003G138500 Sobic004G359800--Sobic003G138500 Sobic002G134200 Sobic002G134200 Sobic004G359800--Sobic002G134200 Sobic004G359800--Sobic003G280800 Sobic010G139000 Sobic010G139000 Sobic004G359800--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic004G359800--Sobic006G182900 Sobic004G359800--Sobic010G176550 Sobic002G127550 Sobic002G127550 Sobic004G359800--Sobic002G127550 Sobic007G099000--Sobic003G106200 Sobic007G099000--Sobic004G359800 Sobic002G161900 Sobic002G161900 Sobic007G099000--Sobic002G161900 Sobic008G082100 Sobic008G082100 Sobic007G099000--Sobic008G082100 Sobic001G072500 Sobic001G072500 Sobic007G099000--Sobic001G072500 Sobic003G252200 Sobic003G252200 Sobic007G099000--Sobic003G252200 Sobic007G099000--Sobic008G011100 Sobic007G099000--Sobic003G280800 Sobic007G099000--Sobic002G169633 Sobic003G381200--Sobic001G090500 Sobic003G381200--Sobic001G159400 Sobic002G276100 Sobic002G276100 Sobic003G381200--Sobic002G276100 Sobic002G168300 Sobic002G168300 Sobic003G381200--Sobic002G168300 Sobic001G102500 Sobic001G102500 Sobic003G381200--Sobic001G102500 Sobic003G381200--Sobic007G065100 Sobic008G172300 Sobic008G172300 Sobic003G381200--Sobic008G172300 Sobic003G381200--Sobic003G138500 Sobic004G026500 Sobic004G026500 Sobic003G381200--Sobic004G026500 Sobic001G219900 Sobic001G219900 Sobic004G223600--Sobic001G219900 Sobic001G214600 Sobic001G214600 Sobic004G223600--Sobic001G214600 Sobic002G317200 Sobic002G317200 Sobic004G223600--Sobic002G317200 Sobic003G307000 Sobic003G307000 Sobic004G223600--Sobic003G307000 Sobic007G042400 Sobic007G042400 Sobic004G223600--Sobic007G042400 Sobic009G247400 Sobic009G247400 Sobic004G223600--Sobic009G247400 Sobic001G311500 Sobic001G311500 Sobic004G223600--Sobic001G311500 Sobic002G071500 Sobic002G071500 Sobic004G223600--Sobic002G071500 Sobic003G152400 Sobic003G152400 Sobic004G223600--Sobic003G152400 Sobic003G416100 Sobic003G416100 Sobic009G085400--Sobic003G416100 Sobic010G248600 Sobic010G248600 Sobic009G085400--Sobic010G248600 Sobic006G214400 Sobic006G214400 Sobic009G085400--Sobic006G214400 Sobic002G114700 Sobic002G114700 Sobic009G085400--Sobic002G114700 Sobic009G085400--Sobic003G106200 Sobic005G046500 Sobic005G046500 Sobic009G085400--Sobic005G046500 Sobic009G085400--Sobic004G035000 Sobic007G002000 Sobic007G002000 Sobic009G085400--Sobic007G002000 Sobic005G173366 Sobic005G173366 Sobic009G085400--Sobic005G173366 Sobic002G425700 Sobic002G425700 Sobic007G065100--Sobic002G425700 Sobic002G181300 Sobic002G181300 Sobic007G065100--Sobic002G181300 Sobic007G065100--Sobic003G381200 Sobic007G065100--Sobic008G172300 Sobic007G065100--Sobic001G090500 Sobic001G498600 Sobic001G498600 Sobic007G065100--Sobic001G498600 Sobic007G065100--Sobic001G072500 Sobic006G153900 Sobic006G153900 Sobic007G065100--Sobic006G153900 Sobic006G119400 Sobic006G119400 Sobic007G065100--Sobic006G119400
Octagon: transcription factors


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