Gene annotation
Transcriptome id Sobic.004G223600.1
Synonym
Functional annotation transcription factor-related, putative, expressed
UniProt A0A194YR29
Pfam PF04182
Panther DB PTHR15180 PTHR15180:SF1
NCBI CDD -
KEGG Orthology K15199; general transcription factor 3C polypeptide 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17450 : B-block binding subunit of TFIIIC
RAP-DB (Rice) LOC_Os02g42200.1 : transcription factor-related, putative, expressed
MaizeGDB (Corn) Zm00025a021062 , Zm00025a021060 , Zm00025a021061 , Zm00025a022074 , Zm00025a022070 , Zm00025a022071 , Zm00025a022051 , Zm00025a021059 , Zm00025a021058 , Zm00025a022084 , Zm00025a015510 , Zm00025a022060 , Zm00025a022064 , Zm00025a022040 , Zm00025a022042 , Zm00025a022045 , Zm00025a022049
Brachypodium KQK00450 , KQK00445 , KQK00447 , KQK00446 , KQK00449 , KQK00448
Barley HORVU1Hr1G093000.9 , HORVU1Hr1G093000.8 , HORVU1Hr1G093000.2 , HORVU1Hr1G093000.7 , HORVU1Hr1G093000.5 , HORVU1Hr1G093000.4 , HORVU1Hr1G093000.19 , HORVU1Hr1G093000.12 , HORVU1Hr1G093000.11 , HORVU1Hr1G093000.10 , HORVU1Hr1G093000.17 , HORVU1Hr1G093000.16 , HORVU1Hr1G093000.15 , HORVU6Hr1G059300.9 , HORVU6Hr1G059300.8 , HORVU6Hr1G059300.3 , HORVU6Hr1G059300.2 , HORVU6Hr1G059300.5 , HORVU6Hr1G059300.4 , HORVU6Hr1G059300.7 , HORVU6Hr1G059300.6 , HORVU1Hr1G093000.20 , HORVU1Hr1G093000.37 , HORVU1Hr1G093000.36 , HORVU1Hr1G093000.30 , HORVU1Hr1G093000.32 , HORVU1Hr1G093000.23 , HORVU1Hr1G093000.26 , HORVU1Hr1G093000.27 , HORVU1Hr1G093000.24 , HORVU1Hr1G093000.25 , HORVU1Hr1G093000.28 , HORVU1Hr1G093000.53 , HORVU1Hr1G093000.51 , HORVU1Hr1G093000.50 , HORVU6Hr1G059300.20 , HORVU6Hr1G059300.21 , HORVU6Hr1G059300.22 , HORVU1Hr1G093000.44 , HORVU1Hr1G093000.45 , HORVU1Hr1G093000.46 , HORVU1Hr1G093000.41 , HORVU1Hr1G093000.42 , HORVU1Hr1G093000.43 , HORVU1Hr1G093000.48 , HORVU1Hr1G093000.49 , HORVU6Hr1G059300.19 , HORVU6Hr1G059300.18 , HORVU6Hr1G059300.15 , HORVU6Hr1G059300.14 , HORVU6Hr1G059300.17 , HORVU6Hr1G059300.16 , HORVU6Hr1G059300.11 , HORVU6Hr1G059300.10 , HORVU6Hr1G059300.13 , HORVU6Hr1G059300.12
Wheat TraesCS6D02G213900 , TraesCS6D02G213900 , TraesCS1B02G460500 , TraesCS1B02G460500 , TraesCS1D02G435700 , TraesCS6A02G221300 , TraesCS6A02G221300 , TraesCS6A02G233300 , TraesCS6D02G213900 , TraesCS6B02G259900 , TraesCS6B02G259900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G219900 expressed protein -
2 Sobic.001G214600 expressed protein -
3 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
4 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
5 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
6 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
7 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
8 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
9 Sobic.003G152400 WD domain containing protein, putative, expressed K17601: WD repeat-containing protein 81
10 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
11 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
12 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
13 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
14 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
15 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
16 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
17 Sobic.010G001100 chromo domain containing protein, expressed -
18 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
19 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
20 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4


Gene co-expression network
sample Sobic004G223600 Sobic004G223600 Sobic001G219900 Sobic001G219900 Sobic004G223600--Sobic001G219900 Sobic001G214600 Sobic001G214600 Sobic004G223600--Sobic001G214600 Sobic002G317200 Sobic002G317200 Sobic004G223600--Sobic002G317200 Sobic003G307000 Sobic003G307000 Sobic004G223600--Sobic003G307000 Sobic007G042400 Sobic007G042400 Sobic004G223600--Sobic007G042400 Sobic009G247400 Sobic009G247400 Sobic004G223600--Sobic009G247400 Sobic001G311500 Sobic001G311500 Sobic004G223600--Sobic001G311500 Sobic002G071500 Sobic002G071500 Sobic004G223600--Sobic002G071500 Sobic003G152400 Sobic003G152400 Sobic004G223600--Sobic003G152400 Sobic003G408600 Sobic003G408600 Sobic001G219900--Sobic003G408600 Sobic001G219900--Sobic002G071500 Sobic001G219900--Sobic004G223600 Sobic001G058700 Sobic001G058700 Sobic001G219900--Sobic001G058700 Sobic002G397500 Sobic002G397500 Sobic001G219900--Sobic002G397500 Sobic001G050600 Sobic001G050600 Sobic001G219900--Sobic001G050600 Sobic010G001100 Sobic010G001100 Sobic001G219900--Sobic010G001100 Sobic009G119000 Sobic009G119000 Sobic001G219900--Sobic009G119000 Sobic008G009700 Sobic008G009700 Sobic001G219900--Sobic008G009700 Sobic004G260100 Sobic004G260100 Sobic001G214600--Sobic004G260100 Sobic001G214600--Sobic009G247400 Sobic009G084900 Sobic009G084900 Sobic001G214600--Sobic009G084900 Sobic010G147833 Sobic010G147833 Sobic001G214600--Sobic010G147833 Sobic001G214600--Sobic002G317200 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G214600--Sobic001G219900 Sobic001G493200 Sobic001G493200 Sobic001G214600--Sobic001G493200 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic001G219600 Sobic001G219600 Sobic002G317200--Sobic001G219600 Sobic004G314000 Sobic004G314000 Sobic002G317200--Sobic004G314000 Sobic001G433800 Sobic001G433800 Sobic002G317200--Sobic001G433800 Sobic003G095900 Sobic003G095900 Sobic002G317200--Sobic003G095900 Sobic004G242400 Sobic004G242400 Sobic002G317200--Sobic004G242400 Sobic002G317200--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic002G317200--Sobic005G112300 Sobic009G260500 Sobic009G260500 Sobic002G317200--Sobic009G260500 Sobic007G000100 Sobic007G000100 Sobic003G307000--Sobic007G000100 Sobic002G153700 Sobic002G153700 Sobic003G307000--Sobic002G153700 Sobic003G445400 Sobic003G445400 Sobic003G307000--Sobic003G445400 Sobic009G000500 Sobic009G000500 Sobic003G307000--Sobic009G000500 Sobic001G511500 Sobic001G511500 Sobic003G307000--Sobic001G511500 Sobic001G306900 Sobic001G306900 Sobic003G307000--Sobic001G306900 Sobic004G031700 Sobic004G031700 Sobic003G307000--Sobic004G031700 Sobic003G394300 Sobic003G394300 Sobic003G307000--Sobic003G394300 Sobic010G065300 Sobic010G065300 Sobic003G307000--Sobic010G065300 Sobic003G444800 Sobic003G444800 Sobic007G042400--Sobic003G444800 Sobic007G042400--Sobic006G234700 Sobic007G042400--Sobic009G084900 Sobic007G042400--Sobic003G152400 Sobic010G059500 Sobic010G059500 Sobic007G042400--Sobic010G059500 Sobic007G042400--Sobic009G247400 Sobic003G059750 Sobic003G059750 Sobic007G042400--Sobic003G059750 Sobic004G357100 Sobic004G357100 Sobic007G042400--Sobic004G357100 Sobic007G042400--Sobic001G311500 Sobic009G247400--Sobic001G311500 Sobic010G279450 Sobic010G279450 Sobic009G247400--Sobic010G279450 Sobic009G247400--Sobic009G260500 Sobic004G009600 Sobic004G009600 Sobic009G247400--Sobic004G009600 Sobic009G247400--Sobic001G214600 Sobic001G363500 Sobic001G363500 Sobic009G247400--Sobic001G363500 Sobic009G247400--Sobic001G219600 Sobic009G247400--Sobic002G317200 Sobic009G247400--Sobic004G314000 Sobic010G139000 Sobic010G139000 Sobic001G311500--Sobic010G139000 Sobic001G311500--Sobic009G247400 Sobic001G311500--Sobic005G112300 Sobic001G311500--Sobic003G059750 Sobic001G311500--Sobic008G009700 Sobic001G311500--Sobic004G314000 Sobic001G311500--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G311500--Sobic008G028700 Sobic001G311500--Sobic001G363500 Sobic002G071500--Sobic005G112300 Sobic002G071500--Sobic003G408600 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G071500--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic003G152400--Sobic004G357100 Sobic003G152400--Sobic007G042400 Sobic002G430300 Sobic002G430300 Sobic003G152400--Sobic002G430300 Sobic003G152400--Sobic004G223600 Sobic008G098300 Sobic008G098300 Sobic003G152400--Sobic008G098300 Sobic003G152400--Sobic009G084900 Sobic002G063900 Sobic002G063900 Sobic003G152400--Sobic002G063900 Sobic004G246100 Sobic004G246100 Sobic003G152400--Sobic004G246100 Sobic001G145400 Sobic001G145400 Sobic003G152400--Sobic001G145400
Octagon: transcription factors


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