Gene annotation
Transcriptome id Sobic.001G081000.1
Synonym INDL, Sb01g007300
Functional annotation nucleotide-binding protein-like, putative, expressed
UniProt A0A1B6QHU1
Pfam PF01656
Panther DB PTHR23264 PTHR23264:SF31
NCBI CDD KOG3022; Predicted ATPase, nucleotide-binding
KEGG Orthology K03593; mrp, ATP-binding protein involved in chromosome partitioning
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19540 : IND1(iron-sulfur protein required for NADH dehydrogenase)-like
RAP-DB (Rice) LOC_Os03g42880.1 : nucleotide-binding protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a007360 , Zm00025a017291
Brachypodium KQK14104
Barley HORVU4Hr1G011620.8 , HORVU4Hr1G011620.9 , HORVU4Hr1G011620.1 , HORVU4Hr1G011620.2 , HORVU4Hr1G011620.3 , HORVU4Hr1G011620.4 , HORVU4Hr1G011620.5 , HORVU4Hr1G011620.6 , HORVU4Hr1G011620.12 , HORVU4Hr1G011620.13 , HORVU4Hr1G011620.10 , HORVU4Hr1G011620.11 , HORVU4Hr1G011620.16 , HORVU4Hr1G011620.14 , HORVU4Hr1G011620.15
Wheat TraesCS4A02G245700 , TraesCS4B02G069800 , TraesCS4D02G068500 , TraesCS4D02G068500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
2 Sobic.003G221600 expressed protein -
3 Sobic.008G131000 domain of unknown function family protein, expressed -
4 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
5 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
6 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
7 Sobic.008G083000 ZOS12-03 - C2H2 zinc finger protein, expressed -
8 Sobic.007G220300 WD domain, G-beta repeat domain containing protein, expressed K11374: elongator complex protein 2
9 Sobic.009G145101 - -
10 Sobic.009G251200 expressed protein -
11 Sobic.005G157100 THUMP domain-containing protein, putative, expressed K06963: TAN1, tRNA acetyltransferase TAN1
12 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
13 Sobic.004G223600 transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
14 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
15 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
16 Sobic.008G078300 la domain containing protein, expressed K15191: La-related protein 7
17 Sobic.002G309200 FAR1 family protein, expressed -
18 Sobic.002G164800 SET domain containing protein, expressed K11423: [histone H3]-dimethyl-L-lysine36 N-methyltransferase
19 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
20 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1


Gene co-expression network
sample Sobic001G081000 Sobic001G081000 Sobic004G018300 Sobic004G018300 Sobic001G081000--Sobic004G018300 Sobic003G221600 Sobic003G221600 Sobic001G081000--Sobic003G221600 Sobic008G131000 Sobic008G131000 Sobic001G081000--Sobic008G131000 Sobic003G141500 Sobic003G141500 Sobic001G081000--Sobic003G141500 Sobic008G014500 Sobic008G014500 Sobic001G081000--Sobic008G014500 Sobic003G258900 Sobic003G258900 Sobic001G081000--Sobic003G258900 Sobic008G083000 Sobic008G083000 Sobic001G081000--Sobic008G083000 Sobic007G220300 Sobic007G220300 Sobic001G081000--Sobic007G220300 Sobic009G145101 Sobic009G145101 Sobic001G081000--Sobic009G145101 Sobic004G087600 Sobic004G087600 Sobic004G018300--Sobic004G087600 Sobic001G167200 Sobic001G167200 Sobic004G018300--Sobic001G167200 Sobic008G011100 Sobic008G011100 Sobic004G018300--Sobic008G011100 Sobic002G158700 Sobic002G158700 Sobic004G018300--Sobic002G158700 Sobic002G396000 Sobic002G396000 Sobic004G018300--Sobic002G396000 Sobic004G018300--Sobic001G081000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic003G221600--Sobic001G081000 Sobic003G221600--Sobic003G258900 Sobic008G078300 Sobic008G078300 Sobic003G221600--Sobic008G078300 Sobic003G221600--Sobic009G145101 Sobic005G157100 Sobic005G157100 Sobic003G221600--Sobic005G157100 Sobic003G221600--Sobic007G220300 Sobic003G221600--Sobic008G131000 Sobic003G267800 Sobic003G267800 Sobic003G221600--Sobic003G267800 Sobic006G226300 Sobic006G226300 Sobic003G221600--Sobic006G226300 Sobic010G236400 Sobic010G236400 Sobic008G131000--Sobic010G236400 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic008G131000--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic008G131000--Sobic010G209400 Sobic003G401100 Sobic003G401100 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic003G187500 Sobic003G187500 Sobic008G131000--Sobic003G187500 Sobic001G219600 Sobic001G219600 Sobic003G141500--Sobic001G219600 Sobic008G047800 Sobic008G047800 Sobic003G141500--Sobic008G047800 Sobic009G050900 Sobic009G050900 Sobic003G141500--Sobic009G050900 Sobic001G493200 Sobic001G493200 Sobic003G141500--Sobic001G493200 Sobic002G143500 Sobic002G143500 Sobic003G141500--Sobic002G143500 Sobic003G443100 Sobic003G443100 Sobic003G141500--Sobic003G443100 Sobic003G141500--Sobic009G126400 Sobic001G071400 Sobic001G071400 Sobic003G141500--Sobic001G071400 Sobic006G200600 Sobic006G200600 Sobic003G141500--Sobic006G200600 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic003G258900--Sobic002G396000 Sobic003G258900--Sobic002G158700 Sobic003G258900--Sobic003G267800 Sobic006G102100 Sobic006G102100 Sobic003G258900--Sobic006G102100 Sobic003G258900--Sobic001G081000 Sobic003G258900--Sobic006G226300 Sobic003G442000 Sobic003G442000 Sobic003G258900--Sobic003G442000 Sobic009G225200 Sobic009G225200 Sobic003G258900--Sobic009G225200 Sobic009G046700 Sobic009G046700 Sobic003G258900--Sobic009G046700 Sobic005G084100 Sobic005G084100 Sobic008G083000--Sobic005G084100 Sobic010G279700 Sobic010G279700 Sobic008G083000--Sobic010G279700 Sobic008G083000--Sobic008G131000 Sobic001G281600 Sobic001G281600 Sobic008G083000--Sobic001G281600 Sobic008G083000--Sobic009G050900 Sobic008G083000--Sobic003G401100 Sobic008G083000--Sobic008G011100 Sobic008G083000--Sobic004G018300 Sobic007G000800 Sobic007G000800 Sobic008G083000--Sobic007G000800 Sobic006G086600 Sobic006G086600 Sobic007G220300--Sobic006G086600 Sobic007G220300--Sobic008G131000 Sobic002G317200 Sobic002G317200 Sobic007G220300--Sobic002G317200 Sobic001G334700 Sobic001G334700 Sobic007G220300--Sobic001G334700 Sobic001G171600 Sobic001G171600 Sobic007G220300--Sobic001G171600 Sobic004G332400 Sobic004G332400 Sobic007G220300--Sobic004G332400 Sobic007G220300--Sobic001G081000 Sobic003G171500 Sobic003G171500 Sobic007G220300--Sobic003G171500 Sobic007G207200 Sobic007G207200 Sobic007G220300--Sobic007G207200 Sobic009G145101--Sobic001G081000 Sobic006G231800 Sobic006G231800 Sobic009G145101--Sobic006G231800 Sobic005G059200 Sobic005G059200 Sobic009G145101--Sobic005G059200 Sobic003G189333 Sobic003G189333 Sobic009G145101--Sobic003G189333 Sobic002G105101 Sobic002G105101 Sobic009G145101--Sobic002G105101 Sobic009G145101--Sobic006G226300 Sobic009G145101--Sobic003G221600 Sobic007G217100 Sobic007G217100 Sobic009G145101--Sobic007G217100 Sobic009G251200 Sobic009G251200 Sobic009G145101--Sobic009G251200
Octagon: transcription factors


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