Gene annotation
Transcriptome id Sobic.008G078300.1
Synonym Sb08g007220
Functional annotation la domain containing protein, expressed
UniProt C5YTS6
Pfam PF07145 PF05383
Panther DB PTHR22792 PTHR22792:SF52
NCBI CDD KOG1855; Predicted RNA-binding protein
KEGG Orthology K15191; La-related protein 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43970 : RNA-binding protein
RAP-DB (Rice) LOC_Os12g12360.1 : transposon protein, putative, Mutator sub-class, expressed
MaizeGDB (Corn) Zm00025a054477 , Zm00025a015596
Brachypodium KQJ91831 , KQJ88746
Barley HORVU5Hr1G029110.1
Wheat TraesCS5B02G121000 , TraesCS5B02G121000 , TraesCS4A02G229400
Populus -


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cDNA sequences
Sobic.008G078300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
2 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
3 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
4 Sobic.002G417800 alpha-galactosidase precursor, putative, expressed K07407: E3.2.1.22B, galA, alpha-galactosidase
5 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
6 Sobic.003G221600 expressed protein -
7 Sobic.001G498200 YT521-B-like family domain containing protein, expressed -
8 Sobic.003G018900 bromodomain containing protein, expressed K11684: bromodomain-containing factor 1
9 Sobic.009G046700 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
10 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
11 Sobic.004G033600 expressed protein -
12 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
13 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
14 Sobic.003G106200 expressed protein K13144: integrator complex subunit 7
15 Sobic.009G137200 DIP1, putative, expressed -
16 Sobic.009G135800 CUE domain containing protein, expressed -
17 Sobic.004G225000 -(PubMedID : 27964718)@nitrilase, putative, expressed K01501: nitrilase
18 Sobic.005G106101 - -
19 Sobic.002G164800 SET domain containing protein, expressed K11423: [histone H3]-dimethyl-L-lysine36 N-methyltransferase
20 Sobic.006G194400 cyclin-T1-4, putative, expressed K15188: cyclin T


Gene co-expression network
sample Sobic008G078300 Sobic008G078300 Sobic003G258900 Sobic003G258900 Sobic008G078300--Sobic003G258900 Sobic002G396000 Sobic002G396000 Sobic008G078300--Sobic002G396000 Sobic001G081000 Sobic001G081000 Sobic008G078300--Sobic001G081000 Sobic002G417800 Sobic002G417800 Sobic008G078300--Sobic002G417800 Sobic004G018300 Sobic004G018300 Sobic008G078300--Sobic004G018300 Sobic003G221600 Sobic003G221600 Sobic008G078300--Sobic003G221600 Sobic001G498200 Sobic001G498200 Sobic008G078300--Sobic001G498200 Sobic003G018900 Sobic003G018900 Sobic008G078300--Sobic003G018900 Sobic009G046700 Sobic009G046700 Sobic008G078300--Sobic009G046700 Sobic003G258900--Sobic002G396000 Sobic002G158700 Sobic002G158700 Sobic003G258900--Sobic002G158700 Sobic003G267800 Sobic003G267800 Sobic003G258900--Sobic003G267800 Sobic006G102100 Sobic006G102100 Sobic003G258900--Sobic006G102100 Sobic003G258900--Sobic001G081000 Sobic006G226300 Sobic006G226300 Sobic003G258900--Sobic006G226300 Sobic003G442000 Sobic003G442000 Sobic003G258900--Sobic003G442000 Sobic009G225200 Sobic009G225200 Sobic003G258900--Sobic009G225200 Sobic003G258900--Sobic009G046700 Sobic002G396000--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic002G396000--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic002G396000--Sobic007G096000 Sobic003G280800 Sobic003G280800 Sobic002G396000--Sobic003G280800 Sobic001G511500 Sobic001G511500 Sobic002G396000--Sobic001G511500 Sobic009G210500 Sobic009G210500 Sobic002G396000--Sobic009G210500 Sobic002G396000--Sobic004G018300 Sobic008G131000 Sobic008G131000 Sobic002G396000--Sobic008G131000 Sobic001G090400 Sobic001G090400 Sobic002G396000--Sobic001G090400 Sobic001G081000--Sobic004G018300 Sobic001G081000--Sobic003G221600 Sobic001G081000--Sobic008G131000 Sobic003G141500 Sobic003G141500 Sobic001G081000--Sobic003G141500 Sobic008G014500 Sobic008G014500 Sobic001G081000--Sobic008G014500 Sobic001G081000--Sobic003G258900 Sobic008G083000 Sobic008G083000 Sobic001G081000--Sobic008G083000 Sobic007G220300 Sobic007G220300 Sobic001G081000--Sobic007G220300 Sobic009G145101 Sobic009G145101 Sobic001G081000--Sobic009G145101 Sobic009G135800 Sobic009G135800 Sobic002G417800--Sobic009G135800 Sobic002G417800--Sobic008G078300 Sobic002G417800--Sobic002G396000 Sobic002G053000 Sobic002G053000 Sobic002G417800--Sobic002G053000 Sobic002G417800--Sobic006G128900 Sobic002G417800--Sobic004G018300 Sobic002G417800--Sobic003G267800 Sobic001G292200 Sobic001G292200 Sobic002G417800--Sobic001G292200 Sobic002G417800--Sobic001G081000 Sobic004G087600 Sobic004G087600 Sobic004G018300--Sobic004G087600 Sobic001G167200 Sobic001G167200 Sobic004G018300--Sobic001G167200 Sobic008G011100 Sobic008G011100 Sobic004G018300--Sobic008G011100 Sobic004G018300--Sobic002G158700 Sobic004G018300--Sobic002G396000 Sobic004G018300--Sobic001G081000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic003G221600--Sobic001G081000 Sobic003G221600--Sobic003G258900 Sobic003G221600--Sobic008G078300 Sobic003G221600--Sobic009G145101 Sobic005G157100 Sobic005G157100 Sobic003G221600--Sobic005G157100 Sobic003G221600--Sobic007G220300 Sobic003G221600--Sobic008G131000 Sobic003G221600--Sobic003G267800 Sobic003G221600--Sobic006G226300 Sobic004G256600 Sobic004G256600 Sobic001G498200--Sobic004G256600 Sobic001G028900 Sobic001G028900 Sobic001G498200--Sobic001G028900 Sobic010G248600 Sobic010G248600 Sobic001G498200--Sobic010G248600 Sobic010G270300 Sobic010G270300 Sobic001G498200--Sobic010G270300 Sobic003G113200 Sobic003G113200 Sobic001G498200--Sobic003G113200 Sobic005G015100 Sobic005G015100 Sobic001G498200--Sobic005G015100 Sobic001G498200--Sobic006G128900 Sobic009G117300 Sobic009G117300 Sobic001G498200--Sobic009G117300 Sobic007G031800 Sobic007G031800 Sobic001G498200--Sobic007G031800 Sobic006G273200 Sobic006G273200 Sobic003G018900--Sobic006G273200 Sobic004G021200 Sobic004G021200 Sobic003G018900--Sobic004G021200 Sobic009G157200 Sobic009G157200 Sobic003G018900--Sobic009G157200 Sobic010G279700 Sobic010G279700 Sobic003G018900--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic003G018900--Sobic007G078500 Sobic001G281600 Sobic001G281600 Sobic003G018900--Sobic001G281600 Sobic007G115200 Sobic007G115200 Sobic003G018900--Sobic007G115200 Sobic003G018900--Sobic004G087600 Sobic003G250500 Sobic003G250500 Sobic003G018900--Sobic003G250500 Sobic009G046700--Sobic003G258900 Sobic008G098600 Sobic008G098600 Sobic009G046700--Sobic008G098600 Sobic004G011000 Sobic004G011000 Sobic009G046700--Sobic004G011000 Sobic009G046700--Sobic006G226300 Sobic008G009600 Sobic008G009600 Sobic009G046700--Sobic008G009600 Sobic006G194400 Sobic006G194400 Sobic009G046700--Sobic006G194400 Sobic010G073200 Sobic010G073200 Sobic009G046700--Sobic010G073200 Sobic009G046700--Sobic009G225200 Sobic009G046700--Sobic001G081000
Octagon: transcription factors


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