Gene annotation
Transcriptome id Sobic.009G137200.2,Sobic.009G137200.1
Synonym Sb09g020330
Functional annotation DIP1, putative, expressed
UniProt A0A1B6P8B9 , A0A1B6P8E6
Pfam PF01424 PF12752
Panther DB PTHR15672 PTHR15672:SF15
NCBI CDD KOG2953; mRNA-binding protein Encore
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G56680 : Single-stranded nucleic acid binding R3H protein
RAP-DB (Rice) LOC_Os05g34070.1 : DIP1, putative, expressed
MaizeGDB (Corn) Zm00025a043699 , Zm00025a037445
Brachypodium KQK06264
Barley HORVU1Hr1G063590.4 , HORVU1Hr1G063590.5 , HORVU1Hr1G063590.2 , HORVU1Hr1G063590.3 , HORVU1Hr1G063590.1
Wheat TraesCS1A02G258200 , TraesCS1D02G257500 , TraesCS1D02G257500 , TraesCS1D02G257500 , TraesCS1B02G268700
Populus -


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cDNA sequences
Sobic.009G137200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G078600 YT521-B, putative, expressed -
2 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.003G426800 expressed protein -
4 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
5 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
6 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
7 Sobic.003G084700 - -
8 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
9 Sobic.009G135800 CUE domain containing protein, expressed -
10 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
11 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
12 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
13 Sobic.005G004200 GIL1, putative, expressed -
14 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
15 Sobic.001G091400 expressed protein -
16 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
17 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
18 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
19 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
20 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2


Gene co-expression network
sample Sobic009G137200 Sobic009G137200 Sobic007G078600 Sobic007G078600 Sobic009G137200--Sobic007G078600 Sobic003G394300 Sobic003G394300 Sobic009G137200--Sobic003G394300 Sobic003G426800 Sobic003G426800 Sobic009G137200--Sobic003G426800 Sobic009G179700 Sobic009G179700 Sobic009G137200--Sobic009G179700 Sobic001G498600 Sobic001G498600 Sobic009G137200--Sobic001G498600 Sobic008G067600 Sobic008G067600 Sobic009G137200--Sobic008G067600 Sobic003G084700 Sobic003G084700 Sobic009G137200--Sobic003G084700 Sobic004G057400 Sobic004G057400 Sobic009G137200--Sobic004G057400 Sobic009G135800 Sobic009G135800 Sobic009G137200--Sobic009G135800 Sobic008G047800 Sobic008G047800 Sobic007G078600--Sobic008G047800 Sobic007G078600--Sobic003G394300 Sobic007G078600--Sobic003G084700 Sobic006G118700 Sobic006G118700 Sobic007G078600--Sobic006G118700 Sobic006G200600 Sobic006G200600 Sobic007G078600--Sobic006G200600 Sobic007G078600--Sobic009G179700 Sobic007G078500 Sobic007G078500 Sobic007G078600--Sobic007G078500 Sobic002G134200 Sobic002G134200 Sobic007G078600--Sobic002G134200 Sobic002G133400 Sobic002G133400 Sobic007G078600--Sobic002G133400 Sobic003G445400 Sobic003G445400 Sobic003G394300--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic003G394300--Sobic004G084300 Sobic003G307000 Sobic003G307000 Sobic003G394300--Sobic003G307000 Sobic004G088200 Sobic004G088200 Sobic003G394300--Sobic004G088200 Sobic005G021500 Sobic005G021500 Sobic003G394300--Sobic005G021500 Sobic003G394300--Sobic008G067600 Sobic004G158200 Sobic004G158200 Sobic003G394300--Sobic004G158200 Sobic009G000500 Sobic009G000500 Sobic003G394300--Sobic009G000500 Sobic003G394300--Sobic007G078600 Sobic004G052900 Sobic004G052900 Sobic003G426800--Sobic004G052900 Sobic003G426800--Sobic009G137200 Sobic006G182200 Sobic006G182200 Sobic003G426800--Sobic006G182200 Sobic004G006200 Sobic004G006200 Sobic003G426800--Sobic004G006200 Sobic004G264400 Sobic004G264400 Sobic003G426800--Sobic004G264400 Sobic002G059300 Sobic002G059300 Sobic003G426800--Sobic002G059300 Sobic009G113000 Sobic009G113000 Sobic003G426800--Sobic009G113000 Sobic003G109100 Sobic003G109100 Sobic003G426800--Sobic003G109100 Sobic002G340100 Sobic002G340100 Sobic003G426800--Sobic002G340100 Sobic002G350300 Sobic002G350300 Sobic009G179700--Sobic002G350300 Sobic001G356600 Sobic001G356600 Sobic009G179700--Sobic001G356600 Sobic009G179700--Sobic007G078600 Sobic010G018700 Sobic010G018700 Sobic009G179700--Sobic010G018700 Sobic008G179700 Sobic008G179700 Sobic009G179700--Sobic008G179700 Sobic009G179700--Sobic007G078500 Sobic003G029100 Sobic003G029100 Sobic009G179700--Sobic003G029100 Sobic007G061000 Sobic007G061000 Sobic009G179700--Sobic007G061000 Sobic001G512700 Sobic001G512700 Sobic009G179700--Sobic001G512700 Sobic010G112000 Sobic010G112000 Sobic001G498600--Sobic010G112000 Sobic006G131500 Sobic006G131500 Sobic001G498600--Sobic006G131500 Sobic001G146800 Sobic001G146800 Sobic001G498600--Sobic001G146800 Sobic005G008800 Sobic005G008800 Sobic001G498600--Sobic005G008800 Sobic001G498600--Sobic002G134200 Sobic001G058700 Sobic001G058700 Sobic001G498600--Sobic001G058700 Sobic004G317100 Sobic004G317100 Sobic001G498600--Sobic004G317100 Sobic007G193700 Sobic007G193700 Sobic001G498600--Sobic007G193700 Sobic007G172400 Sobic007G172400 Sobic001G498600--Sobic007G172400 Sobic001G090400 Sobic001G090400 Sobic008G067600--Sobic001G090400 Sobic008G067600--Sobic003G445400 Sobic008G067600--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic008G067600--Sobic001G512700 Sobic008G067600--Sobic009G000500 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800 Sobic001G107500 Sobic001G107500 Sobic003G084700--Sobic001G107500 Sobic003G084700--Sobic007G078600 Sobic009G065100 Sobic009G065100 Sobic003G084700--Sobic009G065100 Sobic003G084700--Sobic004G057400 Sobic003G084700--Sobic008G067600 Sobic003G084700--Sobic001G315100 Sobic003G084700--Sobic001G090400 Sobic004G271900 Sobic004G271900 Sobic003G084700--Sobic004G271900 Sobic009G215800 Sobic009G215800 Sobic003G084700--Sobic009G215800 Sobic004G057400--Sobic001G090400 Sobic004G205600 Sobic004G205600 Sobic004G057400--Sobic004G205600 Sobic004G057400--Sobic002G157300 Sobic004G057400--Sobic009G000500 Sobic004G057400--Sobic008G067600 Sobic006G128900 Sobic006G128900 Sobic004G057400--Sobic006G128900 Sobic007G011400 Sobic007G011400 Sobic004G057400--Sobic007G011400 Sobic004G031700 Sobic004G031700 Sobic004G057400--Sobic004G031700 Sobic007G205800 Sobic007G205800 Sobic004G057400--Sobic007G205800 Sobic009G135800--Sobic004G031700 Sobic009G135800--Sobic002G340100 Sobic008G024600 Sobic008G024600 Sobic009G135800--Sobic008G024600 Sobic009G135800--Sobic006G128900 Sobic002G053000 Sobic002G053000 Sobic009G135800--Sobic002G053000 Sobic009G135800--Sobic003G445400 Sobic002G158700 Sobic002G158700 Sobic009G135800--Sobic002G158700 Sobic006G173100 Sobic006G173100 Sobic009G135800--Sobic006G173100 Sobic009G135800--Sobic009G000500
Octagon: transcription factors


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